Gene : Medtr5g008340 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13675:SF1 - EXPRESSED PROTEIN Description:  complex 1 protein, LYR family protein
Genomic Order:  287 Name:  ? Medtr5g008340
Secondary Identifier:  ? PAC:31085685
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g008340 0.5kb upstream 0.5kb upstream 1289 true chr5: 1752271-1753559 Medicago truncatula
Medtr5g008340 0.5kb upstream 0.5kb upstream 500 false chr5: 1752271-1752770 Medicago truncatula
Medtr5g008340 0.5kb downstream 0.5kb downstream 1289 true chr5: 1752771-1754059 Medicago truncatula
Medtr5g008340 0.5kb downstream 0.5kb downstream 500 false chr5: 1753560-1754059 Medicago truncatula
Medtr5g008340 1.0kb upstream 1.0kb upstream 1789 true chr5: 1751771-1753559 Medicago truncatula
Medtr5g008340 1.0kb upstream 1.0kb upstream 1000 false chr5: 1751771-1752770 Medicago truncatula
Medtr5g008340 1.0kb downstream 1.0kb downstream 1789 true chr5: 1752771-1754559 Medicago truncatula
Medtr5g008340 1.0kb downstream 1.0kb downstream 1000 false chr5: 1753560-1754559 Medicago truncatula
Medtr5g008340 2.0kb upstream 2.0kb upstream 2789 true chr5: 1750771-1753559 Medicago truncatula
Medtr5g008340 2.0kb upstream 2.0kb upstream 2000 false chr5: 1750771-1752770 Medicago truncatula
Medtr5g008340 2.0kb downstream 2.0kb downstream 2789 true chr5: 1752771-1755559 Medicago truncatula
Medtr5g008340 2.0kb downstream 2.0kb downstream 2000 false chr5: 1753560-1755559 Medicago truncatula
Medtr5g008340 5.0kb upstream 5.0kb upstream 5789 true chr5: 1747771-1753559 Medicago truncatula
Medtr5g008340 5.0kb upstream 5.0kb upstream 5000 false chr5: 1747771-1752770 Medicago truncatula
Medtr5g008340 5.0kb downstream 5.0kb downstream 5789 true chr5: 1752771-1758559 Medicago truncatula
Medtr5g008340 5.0kb downstream 5.0kb downstream 5000 false chr5: 1753560-1758559 Medicago truncatula
Medtr5g008340 10.0kb upstream 10.0kb upstream 10789 true chr5: 1742771-1753559 Medicago truncatula
Medtr5g008340 10.0kb upstream 10.0kb upstream 10000 false chr5: 1742771-1752770 Medicago truncatula
Medtr5g008340 10.0kb downstream 10.0kb downstream 10789 true chr5: 1752771-1763559 Medicago truncatula
Medtr5g008340 10.0kb downstream 10.0kb downstream 10000 false chr5: 1753560-1763559 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299214 5265 Fabidae View MSA
124066856 5270 Rosid View MSA
123746501 5271 Pentapetalae View MSA
122793863 5272 Eudicot View MSA
122045056 5273 Angiosperm View MSA
121351084 5274 Embryophyte View MSA
123425666 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.822       Low
cufflinks 4.106        
cufflinks 5.381        
cufflinks 5.661        
cufflinks 6.533        
cufflinks 9.368       High
cufflinks 4.762        
cufflinks 3.824        
cufflinks 5.145        

0 Strain