Gene : Medtr5g009070 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10338:SF126 - MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC Description:  protoporphyrin IX magnesium chelatase subunit ChlD
Genomic Order:  342 Name:  ? Medtr5g009070
Secondary Identifier:  ? PAC:31085308
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CHLOROPHYLL-SYN Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g009070 0.5kb upstream 0.5kb upstream 14028 true chr5: 2069192-2083219 Medicago truncatula
Medtr5g009070 0.5kb upstream 0.5kb upstream 500 false chr5: 2082720-2083219 Medicago truncatula
Medtr5g009070 0.5kb downstream 0.5kb downstream 14028 true chr5: 2068692-2082719 Medicago truncatula
Medtr5g009070 0.5kb downstream 0.5kb downstream 500 false chr5: 2068692-2069191 Medicago truncatula
Medtr5g009070 1.0kb upstream 1.0kb upstream 14528 true chr5: 2069192-2083719 Medicago truncatula
Medtr5g009070 1.0kb upstream 1.0kb upstream 1000 false chr5: 2082720-2083719 Medicago truncatula
Medtr5g009070 1.0kb downstream 1.0kb downstream 14528 true chr5: 2068192-2082719 Medicago truncatula
Medtr5g009070 1.0kb downstream 1.0kb downstream 1000 false chr5: 2068192-2069191 Medicago truncatula
Medtr5g009070 2.0kb upstream 2.0kb upstream 15528 true chr5: 2069192-2084719 Medicago truncatula
Medtr5g009070 2.0kb upstream 2.0kb upstream 2000 false chr5: 2082720-2084719 Medicago truncatula
Medtr5g009070 2.0kb downstream 2.0kb downstream 15528 true chr5: 2067192-2082719 Medicago truncatula
Medtr5g009070 2.0kb downstream 2.0kb downstream 2000 false chr5: 2067192-2069191 Medicago truncatula
Medtr5g009070 5.0kb upstream 5.0kb upstream 18528 true chr5: 2069192-2087719 Medicago truncatula
Medtr5g009070 5.0kb upstream 5.0kb upstream 5000 false chr5: 2082720-2087719 Medicago truncatula
Medtr5g009070 5.0kb downstream 5.0kb downstream 18528 true chr5: 2064192-2082719 Medicago truncatula
Medtr5g009070 5.0kb downstream 5.0kb downstream 5000 false chr5: 2064192-2069191 Medicago truncatula
Medtr5g009070 10.0kb upstream 10.0kb upstream 23528 true chr5: 2069192-2092719 Medicago truncatula
Medtr5g009070 10.0kb upstream 10.0kb upstream 10000 false chr5: 2082720-2092719 Medicago truncatula
Medtr5g009070 10.0kb downstream 10.0kb downstream 23528 true chr5: 2059192-2082719 Medicago truncatula
Medtr5g009070 10.0kb downstream 10.0kb downstream 10000 false chr5: 2059192-2069191 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026552 5273 Angiosperm View MSA
122304637 5265 Fabidae View MSA
124050211 5270 Rosid View MSA
123740767 5271 Pentapetalae View MSA
122793676 5272 Eudicot View MSA
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.537        
cufflinks 7.031        
cufflinks 7.675       High
cufflinks 0.413        
cufflinks 7.349       High
cufflinks 0.342       Low
cufflinks 0.431        
cufflinks 8.363       High
cufflinks 0.567        

0 Strain