Gene : Medtr5g008810 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11764:SF15 - CYCLOARTENOL SYNTHASE Description:  cycloartenol synthase
Genomic Order:  323 Name:  ? Medtr5g008810
Secondary Identifier:  ? PAC:31091557
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-2541 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g008810 0.5kb upstream 0.5kb upstream 12773 true chr5: 1932210-1944982 Medicago truncatula
Medtr5g008810 0.5kb upstream 0.5kb upstream 500 false chr5: 1944483-1944982 Medicago truncatula
Medtr5g008810 0.5kb downstream 0.5kb downstream 12773 true chr5: 1931710-1944482 Medicago truncatula
Medtr5g008810 0.5kb downstream 0.5kb downstream 500 false chr5: 1931710-1932209 Medicago truncatula
Medtr5g008810 1.0kb upstream 1.0kb upstream 13273 true chr5: 1932210-1945482 Medicago truncatula
Medtr5g008810 1.0kb upstream 1.0kb upstream 1000 false chr5: 1944483-1945482 Medicago truncatula
Medtr5g008810 1.0kb downstream 1.0kb downstream 13273 true chr5: 1931210-1944482 Medicago truncatula
Medtr5g008810 1.0kb downstream 1.0kb downstream 1000 false chr5: 1931210-1932209 Medicago truncatula
Medtr5g008810 2.0kb upstream 2.0kb upstream 14273 true chr5: 1932210-1946482 Medicago truncatula
Medtr5g008810 2.0kb upstream 2.0kb upstream 2000 false chr5: 1944483-1946482 Medicago truncatula
Medtr5g008810 2.0kb downstream 2.0kb downstream 14273 true chr5: 1930210-1944482 Medicago truncatula
Medtr5g008810 2.0kb downstream 2.0kb downstream 2000 false chr5: 1930210-1932209 Medicago truncatula
Medtr5g008810 5.0kb upstream 5.0kb upstream 17273 true chr5: 1932210-1949482 Medicago truncatula
Medtr5g008810 5.0kb upstream 5.0kb upstream 5000 false chr5: 1944483-1949482 Medicago truncatula
Medtr5g008810 5.0kb downstream 5.0kb downstream 17273 true chr5: 1927210-1944482 Medicago truncatula
Medtr5g008810 5.0kb downstream 5.0kb downstream 5000 false chr5: 1927210-1932209 Medicago truncatula
Medtr5g008810 10.0kb upstream 10.0kb upstream 22273 true chr5: 1932210-1954482 Medicago truncatula
Medtr5g008810 10.0kb upstream 10.0kb upstream 10000 false chr5: 1944483-1954482 Medicago truncatula
Medtr5g008810 10.0kb downstream 10.0kb downstream 22273 true chr5: 1922210-1944482 Medicago truncatula
Medtr5g008810 10.0kb downstream 10.0kb downstream 10000 false chr5: 1922210-1932209 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305993 5265 Fabidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.529        
cufflinks 0.796        
cufflinks 0.686        
cufflinks 0.26        
cufflinks 1.122        
cufflinks 0.112     Low Low
cufflinks 0.614        
cufflinks 0.613        
cufflinks 1.172       High

0 Strain