Gene : Medtr5g053950 M. truncatula Mt4.0v1
Defline:  (1 of 6) PF06351 - Allene oxide cyclase (Allene_ox_cyc) Description:  allene oxide cyclase
Genomic Order:  2945 Name:  ? Medtr5g053950
Secondary Identifier:  ? PAC:31085644
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-735 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g053950 0.5kb upstream 0.5kb upstream 1845 true chr5: 22226105-22227949 Medicago truncatula
Medtr5g053950 0.5kb upstream 0.5kb upstream 500 false chr5: 22226105-22226604 Medicago truncatula
Medtr5g053950 0.5kb downstream 0.5kb downstream 1845 true chr5: 22226605-22228449 Medicago truncatula
Medtr5g053950 0.5kb downstream 0.5kb downstream 500 false chr5: 22227950-22228449 Medicago truncatula
Medtr5g053950 1.0kb upstream 1.0kb upstream 2345 true chr5: 22225605-22227949 Medicago truncatula
Medtr5g053950 1.0kb upstream 1.0kb upstream 1000 false chr5: 22225605-22226604 Medicago truncatula
Medtr5g053950 1.0kb downstream 1.0kb downstream 2345 true chr5: 22226605-22228949 Medicago truncatula
Medtr5g053950 1.0kb downstream 1.0kb downstream 1000 false chr5: 22227950-22228949 Medicago truncatula
Medtr5g053950 2.0kb upstream 2.0kb upstream 3345 true chr5: 22224605-22227949 Medicago truncatula
Medtr5g053950 2.0kb upstream 2.0kb upstream 2000 false chr5: 22224605-22226604 Medicago truncatula
Medtr5g053950 2.0kb downstream 2.0kb downstream 3345 true chr5: 22226605-22229949 Medicago truncatula
Medtr5g053950 2.0kb downstream 2.0kb downstream 2000 false chr5: 22227950-22229949 Medicago truncatula
Medtr5g053950 5.0kb upstream 5.0kb upstream 6345 true chr5: 22221605-22227949 Medicago truncatula
Medtr5g053950 5.0kb upstream 5.0kb upstream 5000 false chr5: 22221605-22226604 Medicago truncatula
Medtr5g053950 5.0kb downstream 5.0kb downstream 6345 true chr5: 22226605-22232949 Medicago truncatula
Medtr5g053950 5.0kb downstream 5.0kb downstream 5000 false chr5: 22227950-22232949 Medicago truncatula
Medtr5g053950 10.0kb upstream 10.0kb upstream 11345 true chr5: 22216605-22227949 Medicago truncatula
Medtr5g053950 10.0kb upstream 10.0kb upstream 10000 false chr5: 22216605-22226604 Medicago truncatula
Medtr5g053950 10.0kb downstream 10.0kb downstream 11345 true chr5: 22226605-22237949 Medicago truncatula
Medtr5g053950 10.0kb downstream 10.0kb downstream 10000 false chr5: 22227950-22237949 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305764 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.311     High Low
cufflinks 279.275     High High
cufflinks 10.317     High Low
cufflinks 30.984     High  
cufflinks 59.137     High  
cufflinks 9.318       Low
cufflinks 56.262     High  
cufflinks 143.113     High  
cufflinks 213.31     High High

0 Strain