Gene : Medtr5g063920 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF12546 - Blue/Ultraviolet sensing protein C terminal (Cryptochrome_C) Description:  cryptochrome protein
Genomic Order:  3392 Name:  ? Medtr5g063920
Secondary Identifier:  ? PAC:31085855
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g063920 0.5kb upstream 0.5kb upstream 6707 true chr5: 26511016-26517722 Medicago truncatula
Medtr5g063920 0.5kb upstream 0.5kb upstream 500 false chr5: 26511016-26511515 Medicago truncatula
Medtr5g063920 0.5kb downstream 0.5kb downstream 6707 true chr5: 26511516-26518222 Medicago truncatula
Medtr5g063920 0.5kb downstream 0.5kb downstream 500 false chr5: 26517723-26518222 Medicago truncatula
Medtr5g063920 1.0kb upstream 1.0kb upstream 7207 true chr5: 26510516-26517722 Medicago truncatula
Medtr5g063920 1.0kb upstream 1.0kb upstream 1000 false chr5: 26510516-26511515 Medicago truncatula
Medtr5g063920 1.0kb downstream 1.0kb downstream 7207 true chr5: 26511516-26518722 Medicago truncatula
Medtr5g063920 1.0kb downstream 1.0kb downstream 1000 false chr5: 26517723-26518722 Medicago truncatula
Medtr5g063920 2.0kb upstream 2.0kb upstream 8207 true chr5: 26509516-26517722 Medicago truncatula
Medtr5g063920 2.0kb upstream 2.0kb upstream 2000 false chr5: 26509516-26511515 Medicago truncatula
Medtr5g063920 2.0kb downstream 2.0kb downstream 8207 true chr5: 26511516-26519722 Medicago truncatula
Medtr5g063920 2.0kb downstream 2.0kb downstream 2000 false chr5: 26517723-26519722 Medicago truncatula
Medtr5g063920 5.0kb upstream 5.0kb upstream 11207 true chr5: 26506516-26517722 Medicago truncatula
Medtr5g063920 5.0kb upstream 5.0kb upstream 5000 false chr5: 26506516-26511515 Medicago truncatula
Medtr5g063920 5.0kb downstream 5.0kb downstream 11207 true chr5: 26511516-26522722 Medicago truncatula
Medtr5g063920 5.0kb downstream 5.0kb downstream 5000 false chr5: 26517723-26522722 Medicago truncatula
Medtr5g063920 10.0kb upstream 10.0kb upstream 16207 true chr5: 26501516-26517722 Medicago truncatula
Medtr5g063920 10.0kb upstream 10.0kb upstream 10000 false chr5: 26501516-26511515 Medicago truncatula
Medtr5g063920 10.0kb downstream 10.0kb downstream 16207 true chr5: 26511516-26527722 Medicago truncatula
Medtr5g063920 10.0kb downstream 10.0kb downstream 10000 false chr5: 26517723-26527722 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314673 5265 Fabidae View MSA
124068248 5270 Rosid View MSA
123736970 5271 Pentapetalae View MSA
122788964 5272 Eudicot View MSA
122048329 5273 Angiosperm View MSA
121343845 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.65        
cufflinks 22.812     High High
cufflinks 20.688     High High
cufflinks 0.807        
cufflinks 18.076     High  
cufflinks 0.443       Low
cufflinks 1.161        
cufflinks 24.594     High High
cufflinks 1.644        

0 Strain