Gene : Medtr5g061040 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II PROTEIN Description:  DNA-directed RNA polymerase II
Genomic Order:  3255 Name:  ? Medtr5g061040
Secondary Identifier:  ? PAC:31087897
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g061040 0.5kb upstream 0.5kb upstream 9668 true chr5: 25385477-25395144 Medicago truncatula
Medtr5g061040 0.5kb upstream 0.5kb upstream 500 false chr5: 25394645-25395144 Medicago truncatula
Medtr5g061040 0.5kb downstream 0.5kb downstream 9668 true chr5: 25384977-25394644 Medicago truncatula
Medtr5g061040 0.5kb downstream 0.5kb downstream 500 false chr5: 25384977-25385476 Medicago truncatula
Medtr5g061040 1.0kb upstream 1.0kb upstream 10168 true chr5: 25385477-25395644 Medicago truncatula
Medtr5g061040 1.0kb upstream 1.0kb upstream 1000 false chr5: 25394645-25395644 Medicago truncatula
Medtr5g061040 1.0kb downstream 1.0kb downstream 10168 true chr5: 25384477-25394644 Medicago truncatula
Medtr5g061040 1.0kb downstream 1.0kb downstream 1000 false chr5: 25384477-25385476 Medicago truncatula
Medtr5g061040 2.0kb upstream 2.0kb upstream 11168 true chr5: 25385477-25396644 Medicago truncatula
Medtr5g061040 2.0kb upstream 2.0kb upstream 2000 false chr5: 25394645-25396644 Medicago truncatula
Medtr5g061040 2.0kb downstream 2.0kb downstream 11168 true chr5: 25383477-25394644 Medicago truncatula
Medtr5g061040 2.0kb downstream 2.0kb downstream 2000 false chr5: 25383477-25385476 Medicago truncatula
Medtr5g061040 5.0kb upstream 5.0kb upstream 14168 true chr5: 25385477-25399644 Medicago truncatula
Medtr5g061040 5.0kb upstream 5.0kb upstream 5000 false chr5: 25394645-25399644 Medicago truncatula
Medtr5g061040 5.0kb downstream 5.0kb downstream 14168 true chr5: 25380477-25394644 Medicago truncatula
Medtr5g061040 5.0kb downstream 5.0kb downstream 5000 false chr5: 25380477-25385476 Medicago truncatula
Medtr5g061040 10.0kb upstream 10.0kb upstream 19168 true chr5: 25385477-25404644 Medicago truncatula
Medtr5g061040 10.0kb upstream 10.0kb upstream 10000 false chr5: 25394645-25404644 Medicago truncatula
Medtr5g061040 10.0kb downstream 10.0kb downstream 19168 true chr5: 25375477-25394644 Medicago truncatula
Medtr5g061040 10.0kb downstream 10.0kb downstream 10000 false chr5: 25375477-25385476 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041351 5273 Angiosperm View MSA
122303516 5265 Fabidae View MSA
124068509 5270 Rosid View MSA
123739960 5271 Pentapetalae View MSA
122791365 5272 Eudicot View MSA
121346749 5274 Embryophyte View MSA
123424526 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.015        
cufflinks 0.89        
cufflinks 1.163       High
cufflinks 0.554       Low
cufflinks 0.855        
cufflinks 0.49       Low
cufflinks 0.749        
cufflinks 0.914        
cufflinks 0.614        

0 Strain