Gene : Medtr5g065580 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22778//PTHR22778:SF19 - OVARIAN CANCER GENE-2 PROTEIN-RELATED Description:  dihydrofolate reductase-like protein
Genomic Order:  3506 Name:  ? Medtr5g065580
Secondary Identifier:  ? PAC:31090889
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3841 Medicago truncatula pathologic  
Mtruncatula PWY-6612 Medicago truncatula pathologic  
Mtruncatula PWY-6614 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g065580 0.5kb upstream 0.5kb upstream 2287 true chr5: 27573172-27575458 Medicago truncatula
Medtr5g065580 0.5kb upstream 0.5kb upstream 500 false chr5: 27573172-27573671 Medicago truncatula
Medtr5g065580 0.5kb downstream 0.5kb downstream 2287 true chr5: 27573672-27575958 Medicago truncatula
Medtr5g065580 0.5kb downstream 0.5kb downstream 500 false chr5: 27575459-27575958 Medicago truncatula
Medtr5g065580 1.0kb upstream 1.0kb upstream 2787 true chr5: 27572672-27575458 Medicago truncatula
Medtr5g065580 1.0kb upstream 1.0kb upstream 1000 false chr5: 27572672-27573671 Medicago truncatula
Medtr5g065580 1.0kb downstream 1.0kb downstream 2787 true chr5: 27573672-27576458 Medicago truncatula
Medtr5g065580 1.0kb downstream 1.0kb downstream 1000 false chr5: 27575459-27576458 Medicago truncatula
Medtr5g065580 2.0kb upstream 2.0kb upstream 3787 true chr5: 27571672-27575458 Medicago truncatula
Medtr5g065580 2.0kb upstream 2.0kb upstream 2000 false chr5: 27571672-27573671 Medicago truncatula
Medtr5g065580 2.0kb downstream 2.0kb downstream 3787 true chr5: 27573672-27577458 Medicago truncatula
Medtr5g065580 2.0kb downstream 2.0kb downstream 2000 false chr5: 27575459-27577458 Medicago truncatula
Medtr5g065580 5.0kb upstream 5.0kb upstream 6787 true chr5: 27568672-27575458 Medicago truncatula
Medtr5g065580 5.0kb upstream 5.0kb upstream 5000 false chr5: 27568672-27573671 Medicago truncatula
Medtr5g065580 5.0kb downstream 5.0kb downstream 6787 true chr5: 27573672-27580458 Medicago truncatula
Medtr5g065580 5.0kb downstream 5.0kb downstream 5000 false chr5: 27575459-27580458 Medicago truncatula
Medtr5g065580 10.0kb upstream 10.0kb upstream 11787 true chr5: 27563672-27575458 Medicago truncatula
Medtr5g065580 10.0kb upstream 10.0kb upstream 10000 false chr5: 27563672-27573671 Medicago truncatula
Medtr5g065580 10.0kb downstream 10.0kb downstream 11787 true chr5: 27573672-27585458 Medicago truncatula
Medtr5g065580 10.0kb downstream 10.0kb downstream 10000 false chr5: 27575459-27585458 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311254 5265 Fabidae View MSA
124064450 5270 Rosid View MSA
123736447 5271 Pentapetalae View MSA
122793262 5272 Eudicot View MSA
122046471 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348869 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.376        
cufflinks 6.391        
cufflinks 18.846     High  
cufflinks 4.949       Low
cufflinks 5.83        
cufflinks 9.888        
cufflinks 26.425     High High
cufflinks 5.272        
cufflinks 25.274     High High

0 Strain