Gene : Medtr5g066180 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR11945:SF179 - MADS-BOX PROTEIN SVP Description:  MADS-box transcription factor
Genomic Order:  3541 Name:  ? Medtr5g066180
Secondary Identifier:  ? PAC:31091263
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g066180 0.5kb upstream 0.5kb upstream 19215 true chr5: 27897610-27916824 Medicago truncatula
Medtr5g066180 0.5kb upstream 0.5kb upstream 500 false chr5: 27897610-27898109 Medicago truncatula
Medtr5g066180 0.5kb downstream 0.5kb downstream 19215 true chr5: 27898110-27917324 Medicago truncatula
Medtr5g066180 0.5kb downstream 0.5kb downstream 500 false chr5: 27916825-27917324 Medicago truncatula
Medtr5g066180 1.0kb upstream 1.0kb upstream 19715 true chr5: 27897110-27916824 Medicago truncatula
Medtr5g066180 1.0kb upstream 1.0kb upstream 1000 false chr5: 27897110-27898109 Medicago truncatula
Medtr5g066180 1.0kb downstream 1.0kb downstream 19715 true chr5: 27898110-27917824 Medicago truncatula
Medtr5g066180 1.0kb downstream 1.0kb downstream 1000 false chr5: 27916825-27917824 Medicago truncatula
Medtr5g066180 2.0kb upstream 2.0kb upstream 20715 true chr5: 27896110-27916824 Medicago truncatula
Medtr5g066180 2.0kb upstream 2.0kb upstream 2000 false chr5: 27896110-27898109 Medicago truncatula
Medtr5g066180 2.0kb downstream 2.0kb downstream 20715 true chr5: 27898110-27918824 Medicago truncatula
Medtr5g066180 2.0kb downstream 2.0kb downstream 2000 false chr5: 27916825-27918824 Medicago truncatula
Medtr5g066180 5.0kb upstream 5.0kb upstream 23715 true chr5: 27893110-27916824 Medicago truncatula
Medtr5g066180 5.0kb upstream 5.0kb upstream 5000 false chr5: 27893110-27898109 Medicago truncatula
Medtr5g066180 5.0kb downstream 5.0kb downstream 23715 true chr5: 27898110-27921824 Medicago truncatula
Medtr5g066180 5.0kb downstream 5.0kb downstream 5000 false chr5: 27916825-27921824 Medicago truncatula
Medtr5g066180 10.0kb upstream 10.0kb upstream 28715 true chr5: 27888110-27916824 Medicago truncatula
Medtr5g066180 10.0kb upstream 10.0kb upstream 10000 false chr5: 27888110-27898109 Medicago truncatula
Medtr5g066180 10.0kb downstream 10.0kb downstream 28715 true chr5: 27898110-27926824 Medicago truncatula
Medtr5g066180 10.0kb downstream 10.0kb downstream 10000 false chr5: 27916825-27926824 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121655816 5273 Angiosperm View MSA
122296432 5265 Fabidae View MSA
124035642 5270 Rosid View MSA
123609131 5271 Pentapetalae View MSA
122643781 5272 Eudicot View MSA
120927915 5274 Embryophyte View MSA
122968558 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low Low
cufflinks 1.708        
cufflinks 1.592        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.205        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.504        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain