Gene : Medtr5g066080 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12565//PTHR12565:SF120 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Description:  transcription factor
Genomic Order:  3534 Name:  ? Medtr5g066080
Secondary Identifier:  ? PAC:31087156
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g066080 0.5kb upstream 0.5kb upstream 1355 true chr5: 27844164-27845518 Medicago truncatula
Medtr5g066080 0.5kb upstream 0.5kb upstream 500 false chr5: 27845019-27845518 Medicago truncatula
Medtr5g066080 0.5kb downstream 0.5kb downstream 1355 true chr5: 27843664-27845018 Medicago truncatula
Medtr5g066080 0.5kb downstream 0.5kb downstream 500 false chr5: 27843664-27844163 Medicago truncatula
Medtr5g066080 1.0kb upstream 1.0kb upstream 1855 true chr5: 27844164-27846018 Medicago truncatula
Medtr5g066080 1.0kb upstream 1.0kb upstream 1000 false chr5: 27845019-27846018 Medicago truncatula
Medtr5g066080 1.0kb downstream 1.0kb downstream 1855 true chr5: 27843164-27845018 Medicago truncatula
Medtr5g066080 1.0kb downstream 1.0kb downstream 1000 false chr5: 27843164-27844163 Medicago truncatula
Medtr5g066080 2.0kb upstream 2.0kb upstream 2855 true chr5: 27844164-27847018 Medicago truncatula
Medtr5g066080 2.0kb upstream 2.0kb upstream 2000 false chr5: 27845019-27847018 Medicago truncatula
Medtr5g066080 2.0kb downstream 2.0kb downstream 2855 true chr5: 27842164-27845018 Medicago truncatula
Medtr5g066080 2.0kb downstream 2.0kb downstream 2000 false chr5: 27842164-27844163 Medicago truncatula
Medtr5g066080 5.0kb upstream 5.0kb upstream 5855 true chr5: 27844164-27850018 Medicago truncatula
Medtr5g066080 5.0kb upstream 5.0kb upstream 5000 false chr5: 27845019-27850018 Medicago truncatula
Medtr5g066080 5.0kb downstream 5.0kb downstream 5855 true chr5: 27839164-27845018 Medicago truncatula
Medtr5g066080 5.0kb downstream 5.0kb downstream 5000 false chr5: 27839164-27844163 Medicago truncatula
Medtr5g066080 10.0kb upstream 10.0kb upstream 10855 true chr5: 27844164-27855018 Medicago truncatula
Medtr5g066080 10.0kb upstream 10.0kb upstream 10000 false chr5: 27845019-27855018 Medicago truncatula
Medtr5g066080 10.0kb downstream 10.0kb downstream 10855 true chr5: 27834164-27845018 Medicago truncatula
Medtr5g066080 10.0kb downstream 10.0kb downstream 10000 false chr5: 27834164-27844163 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300530 5265 Fabidae View MSA
124070702 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.092        
cufflinks 2.097       High
cufflinks 0.435        
cufflinks 0.17        
cufflinks 1.48       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low Low
cufflinks 1.01        
cufflinks 0.035     Low Low

0 Strain