Gene : Medtr5g043720 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF03732 - Retrotransposon gag protein Description:  hypothetical protein
Genomic Order:  2623 Name:  ? Medtr5g043720
Secondary Identifier:  ? PAC:31085603
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g043720 0.5kb upstream 0.5kb upstream 2087 true chr5: 19218655-19220741 Medicago truncatula
Medtr5g043720 0.5kb upstream 0.5kb upstream 500 false chr5: 19218655-19219154 Medicago truncatula
Medtr5g043720 0.5kb downstream 0.5kb downstream 2087 true chr5: 19219155-19221241 Medicago truncatula
Medtr5g043720 0.5kb downstream 0.5kb downstream 500 false chr5: 19220742-19221241 Medicago truncatula
Medtr5g043720 1.0kb upstream 1.0kb upstream 2587 true chr5: 19218155-19220741 Medicago truncatula
Medtr5g043720 1.0kb upstream 1.0kb upstream 1000 false chr5: 19218155-19219154 Medicago truncatula
Medtr5g043720 1.0kb downstream 1.0kb downstream 2587 true chr5: 19219155-19221741 Medicago truncatula
Medtr5g043720 1.0kb downstream 1.0kb downstream 1000 false chr5: 19220742-19221741 Medicago truncatula
Medtr5g043720 2.0kb upstream 2.0kb upstream 3587 true chr5: 19217155-19220741 Medicago truncatula
Medtr5g043720 2.0kb upstream 2.0kb upstream 2000 false chr5: 19217155-19219154 Medicago truncatula
Medtr5g043720 2.0kb downstream 2.0kb downstream 3587 true chr5: 19219155-19222741 Medicago truncatula
Medtr5g043720 2.0kb downstream 2.0kb downstream 2000 false chr5: 19220742-19222741 Medicago truncatula
Medtr5g043720 5.0kb upstream 5.0kb upstream 6587 true chr5: 19214155-19220741 Medicago truncatula
Medtr5g043720 5.0kb upstream 5.0kb upstream 5000 false chr5: 19214155-19219154 Medicago truncatula
Medtr5g043720 5.0kb downstream 5.0kb downstream 6587 true chr5: 19219155-19225741 Medicago truncatula
Medtr5g043720 5.0kb downstream 5.0kb downstream 5000 false chr5: 19220742-19225741 Medicago truncatula
Medtr5g043720 10.0kb upstream 10.0kb upstream 11587 true chr5: 19209155-19220741 Medicago truncatula
Medtr5g043720 10.0kb upstream 10.0kb upstream 10000 false chr5: 19209155-19219154 Medicago truncatula
Medtr5g043720 10.0kb downstream 10.0kb downstream 11587 true chr5: 19219155-19230741 Medicago truncatula
Medtr5g043720 10.0kb downstream 10.0kb downstream 10000 false chr5: 19220742-19230741 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121625411 5273 Angiosperm Singleton cluster - no MSA
122263391 5265 Fabidae Singleton cluster - no MSA
124004551 5270 Rosid Singleton cluster - no MSA
123578656 5271 Pentapetalae Singleton cluster - no MSA
122613364 5272 Eudicot Singleton cluster - no MSA
120897515 5274 Embryophyte Singleton cluster - no MSA
122938170 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain