Gene : Medtr5g043210 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR21145:SF0 - CHORISMATE MUTASE Description:  chorismate mutase
Genomic Order:  2591 Name:  ? Medtr5g043210
Secondary Identifier:  ? PAC:31089227
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3461 Medicago truncatula pathologic  
Mtruncatula PWY-3462 Medicago truncatula pathologic  
Mtruncatula PWY-3481 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g043210 0.5kb upstream 0.5kb upstream 5226 true chr5: 18982718-18987943 Medicago truncatula
Medtr5g043210 0.5kb upstream 0.5kb upstream 500 false chr5: 18987444-18987943 Medicago truncatula
Medtr5g043210 0.5kb downstream 0.5kb downstream 5226 true chr5: 18982218-18987443 Medicago truncatula
Medtr5g043210 0.5kb downstream 0.5kb downstream 500 false chr5: 18982218-18982717 Medicago truncatula
Medtr5g043210 1.0kb upstream 1.0kb upstream 5726 true chr5: 18982718-18988443 Medicago truncatula
Medtr5g043210 1.0kb upstream 1.0kb upstream 1000 false chr5: 18987444-18988443 Medicago truncatula
Medtr5g043210 1.0kb downstream 1.0kb downstream 5726 true chr5: 18981718-18987443 Medicago truncatula
Medtr5g043210 1.0kb downstream 1.0kb downstream 1000 false chr5: 18981718-18982717 Medicago truncatula
Medtr5g043210 2.0kb upstream 2.0kb upstream 6726 true chr5: 18982718-18989443 Medicago truncatula
Medtr5g043210 2.0kb upstream 2.0kb upstream 2000 false chr5: 18987444-18989443 Medicago truncatula
Medtr5g043210 2.0kb downstream 2.0kb downstream 6726 true chr5: 18980718-18987443 Medicago truncatula
Medtr5g043210 2.0kb downstream 2.0kb downstream 2000 false chr5: 18980718-18982717 Medicago truncatula
Medtr5g043210 5.0kb upstream 5.0kb upstream 9726 true chr5: 18982718-18992443 Medicago truncatula
Medtr5g043210 5.0kb upstream 5.0kb upstream 5000 false chr5: 18987444-18992443 Medicago truncatula
Medtr5g043210 5.0kb downstream 5.0kb downstream 9726 true chr5: 18977718-18987443 Medicago truncatula
Medtr5g043210 5.0kb downstream 5.0kb downstream 5000 false chr5: 18977718-18982717 Medicago truncatula
Medtr5g043210 10.0kb upstream 10.0kb upstream 14726 true chr5: 18982718-18997443 Medicago truncatula
Medtr5g043210 10.0kb upstream 10.0kb upstream 10000 false chr5: 18987444-18997443 Medicago truncatula
Medtr5g043210 10.0kb downstream 10.0kb downstream 14726 true chr5: 18972718-18987443 Medicago truncatula
Medtr5g043210 10.0kb downstream 10.0kb downstream 10000 false chr5: 18972718-18982717 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122309735 5265 Fabidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low  
cufflinks 0.014     Low  
cufflinks 0.014     Low  
cufflinks 0.251       High
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.363       High
cufflinks 0.023     Low  
cufflinks 0.36       High

0 Strain