Gene : Medtr5g046670 M. truncatula Mt4.0v1
Defline:  (1 of 24) PF03110 - SBP domain (SBP) Description:  squamosa promoter-binding-like protein
Genomic Order:  2779 Name:  ? Medtr5g046670
Secondary Identifier:  ? PAC:31089639
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g046670 0.5kb upstream 0.5kb upstream 6761 true chr5: 20459089-20465849 Medicago truncatula
Medtr5g046670 0.5kb upstream 0.5kb upstream 500 false chr5: 20465350-20465849 Medicago truncatula
Medtr5g046670 0.5kb downstream 0.5kb downstream 6761 true chr5: 20458589-20465349 Medicago truncatula
Medtr5g046670 0.5kb downstream 0.5kb downstream 500 false chr5: 20458589-20459088 Medicago truncatula
Medtr5g046670 1.0kb upstream 1.0kb upstream 7261 true chr5: 20459089-20466349 Medicago truncatula
Medtr5g046670 1.0kb upstream 1.0kb upstream 1000 false chr5: 20465350-20466349 Medicago truncatula
Medtr5g046670 1.0kb downstream 1.0kb downstream 7261 true chr5: 20458089-20465349 Medicago truncatula
Medtr5g046670 1.0kb downstream 1.0kb downstream 1000 false chr5: 20458089-20459088 Medicago truncatula
Medtr5g046670 2.0kb upstream 2.0kb upstream 8261 true chr5: 20459089-20467349 Medicago truncatula
Medtr5g046670 2.0kb upstream 2.0kb upstream 2000 false chr5: 20465350-20467349 Medicago truncatula
Medtr5g046670 2.0kb downstream 2.0kb downstream 8261 true chr5: 20457089-20465349 Medicago truncatula
Medtr5g046670 2.0kb downstream 2.0kb downstream 2000 false chr5: 20457089-20459088 Medicago truncatula
Medtr5g046670 5.0kb upstream 5.0kb upstream 11261 true chr5: 20459089-20470349 Medicago truncatula
Medtr5g046670 5.0kb upstream 5.0kb upstream 5000 false chr5: 20465350-20470349 Medicago truncatula
Medtr5g046670 5.0kb downstream 5.0kb downstream 11261 true chr5: 20454089-20465349 Medicago truncatula
Medtr5g046670 5.0kb downstream 5.0kb downstream 5000 false chr5: 20454089-20459088 Medicago truncatula
Medtr5g046670 10.0kb upstream 10.0kb upstream 16261 true chr5: 20459089-20475349 Medicago truncatula
Medtr5g046670 10.0kb upstream 10.0kb upstream 10000 false chr5: 20465350-20475349 Medicago truncatula
Medtr5g046670 10.0kb downstream 10.0kb downstream 16261 true chr5: 20449089-20465349 Medicago truncatula
Medtr5g046670 10.0kb downstream 10.0kb downstream 10000 false chr5: 20449089-20459088 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304141 5265 Fabidae View MSA
124069639 5270 Rosid View MSA
123751370 5271 Pentapetalae View MSA
122794305 5272 Eudicot View MSA
122050333 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121351727 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.213        
cufflinks 2.656        
cufflinks 1.952       Low
cufflinks 9.024     High  
cufflinks 2.289        
cufflinks 2.997        
cufflinks 18.66     High High
cufflinks 2.673        
cufflinks 15.113     High High

0 Strain