Gene : Medtr5g048860 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12565:SF121 - TRANSCRIPTION FACTOR BHLH49 Description:  BHLH transcription factor
Genomic Order:  2861 Name:  ? Medtr5g048860
Secondary Identifier:  ? PAC:31086132
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g048860 0.5kb upstream 0.5kb upstream 4486 true chr5: 21356205-21360690 Medicago truncatula
Medtr5g048860 0.5kb upstream 0.5kb upstream 500 false chr5: 21360191-21360690 Medicago truncatula
Medtr5g048860 0.5kb downstream 0.5kb downstream 4486 true chr5: 21355705-21360190 Medicago truncatula
Medtr5g048860 0.5kb downstream 0.5kb downstream 500 false chr5: 21355705-21356204 Medicago truncatula
Medtr5g048860 1.0kb upstream 1.0kb upstream 4986 true chr5: 21356205-21361190 Medicago truncatula
Medtr5g048860 1.0kb upstream 1.0kb upstream 1000 false chr5: 21360191-21361190 Medicago truncatula
Medtr5g048860 1.0kb downstream 1.0kb downstream 4986 true chr5: 21355205-21360190 Medicago truncatula
Medtr5g048860 1.0kb downstream 1.0kb downstream 1000 false chr5: 21355205-21356204 Medicago truncatula
Medtr5g048860 2.0kb upstream 2.0kb upstream 5986 true chr5: 21356205-21362190 Medicago truncatula
Medtr5g048860 2.0kb upstream 2.0kb upstream 2000 false chr5: 21360191-21362190 Medicago truncatula
Medtr5g048860 2.0kb downstream 2.0kb downstream 5986 true chr5: 21354205-21360190 Medicago truncatula
Medtr5g048860 2.0kb downstream 2.0kb downstream 2000 false chr5: 21354205-21356204 Medicago truncatula
Medtr5g048860 5.0kb upstream 5.0kb upstream 8986 true chr5: 21356205-21365190 Medicago truncatula
Medtr5g048860 5.0kb upstream 5.0kb upstream 5000 false chr5: 21360191-21365190 Medicago truncatula
Medtr5g048860 5.0kb downstream 5.0kb downstream 8986 true chr5: 21351205-21360190 Medicago truncatula
Medtr5g048860 5.0kb downstream 5.0kb downstream 5000 false chr5: 21351205-21356204 Medicago truncatula
Medtr5g048860 10.0kb upstream 10.0kb upstream 13986 true chr5: 21356205-21370190 Medicago truncatula
Medtr5g048860 10.0kb upstream 10.0kb upstream 10000 false chr5: 21360191-21370190 Medicago truncatula
Medtr5g048860 10.0kb downstream 10.0kb downstream 13986 true chr5: 21346205-21360190 Medicago truncatula
Medtr5g048860 10.0kb downstream 10.0kb downstream 10000 false chr5: 21346205-21356204 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300894 5265 Fabidae View MSA
124064699 5270 Rosid View MSA
123741271 5271 Pentapetalae View MSA
122787397 5272 Eudicot View MSA
122048155 5273 Angiosperm View MSA
121350038 5274 Embryophyte View MSA
123381551 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.587        
cufflinks 0.43        
cufflinks 0.817       High
cufflinks 0.191       Low
cufflinks 0.791        
cufflinks 0.104     Low Low
cufflinks 0.338        
cufflinks 0.507        
cufflinks 0.577        

0 Strain