Gene : Medtr5g048350 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 Description:  transcription factor BIM2-like protein
Genomic Order:  2844 Name:  ? Medtr5g048350
Secondary Identifier:  ? PAC:31090342
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g048350 0.5kb upstream 0.5kb upstream 8633 true chr5: 21186807-21195439 Medicago truncatula
Medtr5g048350 0.5kb upstream 0.5kb upstream 500 false chr5: 21194940-21195439 Medicago truncatula
Medtr5g048350 0.5kb downstream 0.5kb downstream 8633 true chr5: 21186307-21194939 Medicago truncatula
Medtr5g048350 0.5kb downstream 0.5kb downstream 500 false chr5: 21186307-21186806 Medicago truncatula
Medtr5g048350 1.0kb upstream 1.0kb upstream 9133 true chr5: 21186807-21195939 Medicago truncatula
Medtr5g048350 1.0kb upstream 1.0kb upstream 1000 false chr5: 21194940-21195939 Medicago truncatula
Medtr5g048350 1.0kb downstream 1.0kb downstream 9133 true chr5: 21185807-21194939 Medicago truncatula
Medtr5g048350 1.0kb downstream 1.0kb downstream 1000 false chr5: 21185807-21186806 Medicago truncatula
Medtr5g048350 2.0kb upstream 2.0kb upstream 10133 true chr5: 21186807-21196939 Medicago truncatula
Medtr5g048350 2.0kb upstream 2.0kb upstream 2000 false chr5: 21194940-21196939 Medicago truncatula
Medtr5g048350 2.0kb downstream 2.0kb downstream 10133 true chr5: 21184807-21194939 Medicago truncatula
Medtr5g048350 2.0kb downstream 2.0kb downstream 2000 false chr5: 21184807-21186806 Medicago truncatula
Medtr5g048350 5.0kb upstream 5.0kb upstream 13133 true chr5: 21186807-21199939 Medicago truncatula
Medtr5g048350 5.0kb upstream 5.0kb upstream 5000 false chr5: 21194940-21199939 Medicago truncatula
Medtr5g048350 5.0kb downstream 5.0kb downstream 13133 true chr5: 21181807-21194939 Medicago truncatula
Medtr5g048350 5.0kb downstream 5.0kb downstream 5000 false chr5: 21181807-21186806 Medicago truncatula
Medtr5g048350 10.0kb upstream 10.0kb upstream 18133 true chr5: 21186807-21204939 Medicago truncatula
Medtr5g048350 10.0kb upstream 10.0kb upstream 10000 false chr5: 21194940-21204939 Medicago truncatula
Medtr5g048350 10.0kb downstream 10.0kb downstream 18133 true chr5: 21176807-21194939 Medicago truncatula
Medtr5g048350 10.0kb downstream 10.0kb downstream 10000 false chr5: 21176807-21186806 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301733 5265 Fabidae View MSA
124066475 5270 Rosid View MSA
123737331 5271 Pentapetalae View MSA
122797269 5272 Eudicot View MSA
122046881 5273 Angiosperm View MSA
121348142 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.772        
cufflinks 1.001        
cufflinks 1.739       High
cufflinks 0.677        
cufflinks 1.593       High
cufflinks 0.451       Low
cufflinks 0.791        
cufflinks 1.227        
cufflinks 0.974        

0 Strain