Gene : Medtr5g053270 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31342:SF7 - PROTEIN CHUP1, CHLOROPLASTIC Description:  CHUP1
Genomic Order:  2915 Name:  ? Medtr5g053270
Secondary Identifier:  ? PAC:31089137
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g053270 0.5kb upstream 0.5kb upstream 6192 true chr5: 21961856-21968047 Medicago truncatula
Medtr5g053270 0.5kb upstream 0.5kb upstream 500 false chr5: 21961856-21962355 Medicago truncatula
Medtr5g053270 0.5kb downstream 0.5kb downstream 6192 true chr5: 21962356-21968547 Medicago truncatula
Medtr5g053270 0.5kb downstream 0.5kb downstream 500 false chr5: 21968048-21968547 Medicago truncatula
Medtr5g053270 1.0kb upstream 1.0kb upstream 6692 true chr5: 21961356-21968047 Medicago truncatula
Medtr5g053270 1.0kb upstream 1.0kb upstream 1000 false chr5: 21961356-21962355 Medicago truncatula
Medtr5g053270 1.0kb downstream 1.0kb downstream 6692 true chr5: 21962356-21969047 Medicago truncatula
Medtr5g053270 1.0kb downstream 1.0kb downstream 1000 false chr5: 21968048-21969047 Medicago truncatula
Medtr5g053270 2.0kb upstream 2.0kb upstream 7692 true chr5: 21960356-21968047 Medicago truncatula
Medtr5g053270 2.0kb upstream 2.0kb upstream 2000 false chr5: 21960356-21962355 Medicago truncatula
Medtr5g053270 2.0kb downstream 2.0kb downstream 7692 true chr5: 21962356-21970047 Medicago truncatula
Medtr5g053270 2.0kb downstream 2.0kb downstream 2000 false chr5: 21968048-21970047 Medicago truncatula
Medtr5g053270 5.0kb upstream 5.0kb upstream 10692 true chr5: 21957356-21968047 Medicago truncatula
Medtr5g053270 5.0kb upstream 5.0kb upstream 5000 false chr5: 21957356-21962355 Medicago truncatula
Medtr5g053270 5.0kb downstream 5.0kb downstream 10692 true chr5: 21962356-21973047 Medicago truncatula
Medtr5g053270 5.0kb downstream 5.0kb downstream 5000 false chr5: 21968048-21973047 Medicago truncatula
Medtr5g053270 10.0kb upstream 10.0kb upstream 15692 true chr5: 21952356-21968047 Medicago truncatula
Medtr5g053270 10.0kb upstream 10.0kb upstream 10000 false chr5: 21952356-21962355 Medicago truncatula
Medtr5g053270 10.0kb downstream 10.0kb downstream 15692 true chr5: 21962356-21978047 Medicago truncatula
Medtr5g053270 10.0kb downstream 10.0kb downstream 10000 false chr5: 21968048-21978047 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301701 5265 Fabidae View MSA
124062330 5270 Rosid View MSA
123739628 5271 Pentapetalae View MSA
122790649 5272 Eudicot View MSA
122047771 5273 Angiosperm View MSA
121348939 5274 Embryophyte View MSA
123381088 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.581        
cufflinks 73.938     High High
cufflinks 66.175     High High
cufflinks 0.236       Low
cufflinks 52.74     High  
cufflinks 0.649        
cufflinks 0.72        
cufflinks 81.244     High High
cufflinks 0.739        

0 Strain