Gene : Medtr5g053550 M. truncatula Mt4.0v1
Defline:  (1 of 32) PF01107 - Viral movement protein (MP) (MP) Description:  cell-to-cell movement protein
Genomic Order:  2929 Name:  ? Medtr5g053550
Secondary Identifier:  ? PAC:31085037
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g053550 0.5kb upstream 0.5kb upstream 1115 true chr5: 22056380-22057494 Medicago truncatula
Medtr5g053550 0.5kb upstream 0.5kb upstream 500 false chr5: 22056380-22056879 Medicago truncatula
Medtr5g053550 0.5kb downstream 0.5kb downstream 1115 true chr5: 22056880-22057994 Medicago truncatula
Medtr5g053550 0.5kb downstream 0.5kb downstream 500 false chr5: 22057495-22057994 Medicago truncatula
Medtr5g053550 1.0kb upstream 1.0kb upstream 1615 true chr5: 22055880-22057494 Medicago truncatula
Medtr5g053550 1.0kb upstream 1.0kb upstream 1000 false chr5: 22055880-22056879 Medicago truncatula
Medtr5g053550 1.0kb downstream 1.0kb downstream 1615 true chr5: 22056880-22058494 Medicago truncatula
Medtr5g053550 1.0kb downstream 1.0kb downstream 1000 false chr5: 22057495-22058494 Medicago truncatula
Medtr5g053550 2.0kb upstream 2.0kb upstream 2615 true chr5: 22054880-22057494 Medicago truncatula
Medtr5g053550 2.0kb upstream 2.0kb upstream 2000 false chr5: 22054880-22056879 Medicago truncatula
Medtr5g053550 2.0kb downstream 2.0kb downstream 2615 true chr5: 22056880-22059494 Medicago truncatula
Medtr5g053550 2.0kb downstream 2.0kb downstream 2000 false chr5: 22057495-22059494 Medicago truncatula
Medtr5g053550 5.0kb upstream 5.0kb upstream 5615 true chr5: 22051880-22057494 Medicago truncatula
Medtr5g053550 5.0kb upstream 5.0kb upstream 5000 false chr5: 22051880-22056879 Medicago truncatula
Medtr5g053550 5.0kb downstream 5.0kb downstream 5615 true chr5: 22056880-22062494 Medicago truncatula
Medtr5g053550 5.0kb downstream 5.0kb downstream 5000 false chr5: 22057495-22062494 Medicago truncatula
Medtr5g053550 10.0kb upstream 10.0kb upstream 10615 true chr5: 22046880-22057494 Medicago truncatula
Medtr5g053550 10.0kb upstream 10.0kb upstream 10000 false chr5: 22046880-22056879 Medicago truncatula
Medtr5g053550 10.0kb downstream 10.0kb downstream 10615 true chr5: 22056880-22067494 Medicago truncatula
Medtr5g053550 10.0kb downstream 10.0kb downstream 10000 false chr5: 22057495-22067494 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028362 5273 Angiosperm View MSA
122288761 5265 Fabidae View MSA
124028953 5270 Rosid View MSA
123751157 5271 Pentapetalae View MSA
122773930 5272 Eudicot View MSA
121297863 5274 Embryophyte View MSA
123335877 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain