Gene : Medtr5g055940 M. truncatula Mt4.0v1
Defline:  (1 of 2) 6.3.5.7 - Glutaminyl-tRNA synthase (glutamine-hydrolyzing) / Glutamyl-tRNA(Gln) amidotransferase Description:  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
Genomic Order:  3041 Name:  ? Medtr5g055940
Secondary Identifier:  ? PAC:31087417
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5921 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g055940 0.5kb upstream 0.5kb upstream 5905 true chr5: 23047084-23052988 Medicago truncatula
Medtr5g055940 0.5kb upstream 0.5kb upstream 500 false chr5: 23052489-23052988 Medicago truncatula
Medtr5g055940 0.5kb downstream 0.5kb downstream 5905 true chr5: 23046584-23052488 Medicago truncatula
Medtr5g055940 0.5kb downstream 0.5kb downstream 500 false chr5: 23046584-23047083 Medicago truncatula
Medtr5g055940 1.0kb upstream 1.0kb upstream 6405 true chr5: 23047084-23053488 Medicago truncatula
Medtr5g055940 1.0kb upstream 1.0kb upstream 1000 false chr5: 23052489-23053488 Medicago truncatula
Medtr5g055940 1.0kb downstream 1.0kb downstream 6405 true chr5: 23046084-23052488 Medicago truncatula
Medtr5g055940 1.0kb downstream 1.0kb downstream 1000 false chr5: 23046084-23047083 Medicago truncatula
Medtr5g055940 2.0kb upstream 2.0kb upstream 7405 true chr5: 23047084-23054488 Medicago truncatula
Medtr5g055940 2.0kb upstream 2.0kb upstream 2000 false chr5: 23052489-23054488 Medicago truncatula
Medtr5g055940 2.0kb downstream 2.0kb downstream 7405 true chr5: 23045084-23052488 Medicago truncatula
Medtr5g055940 2.0kb downstream 2.0kb downstream 2000 false chr5: 23045084-23047083 Medicago truncatula
Medtr5g055940 5.0kb upstream 5.0kb upstream 10405 true chr5: 23047084-23057488 Medicago truncatula
Medtr5g055940 5.0kb upstream 5.0kb upstream 5000 false chr5: 23052489-23057488 Medicago truncatula
Medtr5g055940 5.0kb downstream 5.0kb downstream 10405 true chr5: 23042084-23052488 Medicago truncatula
Medtr5g055940 5.0kb downstream 5.0kb downstream 5000 false chr5: 23042084-23047083 Medicago truncatula
Medtr5g055940 10.0kb upstream 10.0kb upstream 15405 true chr5: 23047084-23062488 Medicago truncatula
Medtr5g055940 10.0kb upstream 10.0kb upstream 10000 false chr5: 23052489-23062488 Medicago truncatula
Medtr5g055940 10.0kb downstream 10.0kb downstream 15405 true chr5: 23037084-23052488 Medicago truncatula
Medtr5g055940 10.0kb downstream 10.0kb downstream 10000 false chr5: 23037084-23047083 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304937 5265 Fabidae View MSA
124063179 5270 Rosid View MSA
123739880 5271 Pentapetalae View MSA
122793755 5272 Eudicot View MSA
122043391 5273 Angiosperm View MSA
121346505 5274 Embryophyte View MSA
123423998 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.798        
cufflinks 26.157     High High
cufflinks 15.141     High  
cufflinks 0.143       Low
cufflinks 27.412     High High
cufflinks 0.034     Low Low
cufflinks 0.475        
cufflinks 21.143     High  
cufflinks 0.361        

0 Strain