Gene : Medtr5g034820 M. truncatula Mt4.0v1
Defline:  (1 of 3) 6.1.1.3 - Threonine--tRNA ligase / Threonyl-tRNA synthetase Description:  threonyl-tRNA synthetase/threonine-tRNA ligase, putative
Genomic Order:  2095 Name:  ? Medtr5g034820
Secondary Identifier:  ? PAC:31085663
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g034820 0.5kb upstream 0.5kb upstream 12381 true chr5: 15119215-15131595 Medicago truncatula
Medtr5g034820 0.5kb upstream 0.5kb upstream 500 false chr5: 15119215-15119714 Medicago truncatula
Medtr5g034820 0.5kb downstream 0.5kb downstream 12381 true chr5: 15119715-15132095 Medicago truncatula
Medtr5g034820 0.5kb downstream 0.5kb downstream 500 false chr5: 15131596-15132095 Medicago truncatula
Medtr5g034820 1.0kb upstream 1.0kb upstream 12881 true chr5: 15118715-15131595 Medicago truncatula
Medtr5g034820 1.0kb upstream 1.0kb upstream 1000 false chr5: 15118715-15119714 Medicago truncatula
Medtr5g034820 1.0kb downstream 1.0kb downstream 12881 true chr5: 15119715-15132595 Medicago truncatula
Medtr5g034820 1.0kb downstream 1.0kb downstream 1000 false chr5: 15131596-15132595 Medicago truncatula
Medtr5g034820 2.0kb upstream 2.0kb upstream 13881 true chr5: 15117715-15131595 Medicago truncatula
Medtr5g034820 2.0kb upstream 2.0kb upstream 2000 false chr5: 15117715-15119714 Medicago truncatula
Medtr5g034820 2.0kb downstream 2.0kb downstream 13881 true chr5: 15119715-15133595 Medicago truncatula
Medtr5g034820 2.0kb downstream 2.0kb downstream 2000 false chr5: 15131596-15133595 Medicago truncatula
Medtr5g034820 5.0kb upstream 5.0kb upstream 16881 true chr5: 15114715-15131595 Medicago truncatula
Medtr5g034820 5.0kb upstream 5.0kb upstream 5000 false chr5: 15114715-15119714 Medicago truncatula
Medtr5g034820 5.0kb downstream 5.0kb downstream 16881 true chr5: 15119715-15136595 Medicago truncatula
Medtr5g034820 5.0kb downstream 5.0kb downstream 5000 false chr5: 15131596-15136595 Medicago truncatula
Medtr5g034820 10.0kb upstream 10.0kb upstream 21881 true chr5: 15109715-15131595 Medicago truncatula
Medtr5g034820 10.0kb upstream 10.0kb upstream 10000 false chr5: 15109715-15119714 Medicago truncatula
Medtr5g034820 10.0kb downstream 10.0kb downstream 21881 true chr5: 15119715-15141595 Medicago truncatula
Medtr5g034820 10.0kb downstream 10.0kb downstream 10000 false chr5: 15131596-15141595 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302424 5265 Fabidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.675        
cufflinks 5.874        
cufflinks 4.457        
cufflinks 2.251       Low
cufflinks 10.424     High High
cufflinks 1.726       Low
cufflinks 5.085        
cufflinks 5.368        
cufflinks 5.401        

0 Strain