Gene : Medtr5g038420 M. truncatula Mt4.0v1
Defline:  (1 of 8) PF13426 - PAS domain (PAS_9) Description:  TWIN LOV protein
Genomic Order:  2332 Name:  ? Medtr5g038420
Secondary Identifier:  ? PAC:31090657
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g038420 0.5kb upstream 0.5kb upstream 6498 true chr5: 16848506-16855003 Medicago truncatula
Medtr5g038420 0.5kb upstream 0.5kb upstream 500 false chr5: 16854504-16855003 Medicago truncatula
Medtr5g038420 0.5kb downstream 0.5kb downstream 6498 true chr5: 16848006-16854503 Medicago truncatula
Medtr5g038420 0.5kb downstream 0.5kb downstream 500 false chr5: 16848006-16848505 Medicago truncatula
Medtr5g038420 1.0kb upstream 1.0kb upstream 6998 true chr5: 16848506-16855503 Medicago truncatula
Medtr5g038420 1.0kb upstream 1.0kb upstream 1000 false chr5: 16854504-16855503 Medicago truncatula
Medtr5g038420 1.0kb downstream 1.0kb downstream 6998 true chr5: 16847506-16854503 Medicago truncatula
Medtr5g038420 1.0kb downstream 1.0kb downstream 1000 false chr5: 16847506-16848505 Medicago truncatula
Medtr5g038420 2.0kb upstream 2.0kb upstream 7998 true chr5: 16848506-16856503 Medicago truncatula
Medtr5g038420 2.0kb upstream 2.0kb upstream 2000 false chr5: 16854504-16856503 Medicago truncatula
Medtr5g038420 2.0kb downstream 2.0kb downstream 7998 true chr5: 16846506-16854503 Medicago truncatula
Medtr5g038420 2.0kb downstream 2.0kb downstream 2000 false chr5: 16846506-16848505 Medicago truncatula
Medtr5g038420 5.0kb upstream 5.0kb upstream 10998 true chr5: 16848506-16859503 Medicago truncatula
Medtr5g038420 5.0kb upstream 5.0kb upstream 5000 false chr5: 16854504-16859503 Medicago truncatula
Medtr5g038420 5.0kb downstream 5.0kb downstream 10998 true chr5: 16843506-16854503 Medicago truncatula
Medtr5g038420 5.0kb downstream 5.0kb downstream 5000 false chr5: 16843506-16848505 Medicago truncatula
Medtr5g038420 10.0kb upstream 10.0kb upstream 15998 true chr5: 16848506-16864503 Medicago truncatula
Medtr5g038420 10.0kb upstream 10.0kb upstream 10000 false chr5: 16854504-16864503 Medicago truncatula
Medtr5g038420 10.0kb downstream 10.0kb downstream 15998 true chr5: 16838506-16854503 Medicago truncatula
Medtr5g038420 10.0kb downstream 10.0kb downstream 10000 false chr5: 16838506-16848505 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305323 5265 Fabidae View MSA
124063495 5270 Rosid View MSA
123740097 5271 Pentapetalae View MSA
122769970 5272 Eudicot View MSA
122045856 5273 Angiosperm View MSA
121348460 5274 Embryophyte View MSA
123424929 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.063        
cufflinks 6.434        
cufflinks 10.392     High High
cufflinks 1.377       Low
cufflinks 4.794        
cufflinks 1.637       Low
cufflinks 3.836        
cufflinks 9.352     High High
cufflinks 1.846        

0 Strain