Gene : Medtr5g040080 M. truncatula Mt4.0v1
Defline:  (1 of 4) PF09133 - SANTA (SANT Associated) (SANTA) Description:  SANTA (SANT associated) protein
Genomic Order:  2422 Name:  ? Medtr5g040080
Secondary Identifier:  ? PAC:31086842
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g040080 0.5kb upstream 0.5kb upstream 2629 true chr5: 17649135-17651763 Medicago truncatula
Medtr5g040080 0.5kb upstream 0.5kb upstream 500 false chr5: 17649135-17649634 Medicago truncatula
Medtr5g040080 0.5kb downstream 0.5kb downstream 2629 true chr5: 17649635-17652263 Medicago truncatula
Medtr5g040080 0.5kb downstream 0.5kb downstream 500 false chr5: 17651764-17652263 Medicago truncatula
Medtr5g040080 1.0kb upstream 1.0kb upstream 3129 true chr5: 17648635-17651763 Medicago truncatula
Medtr5g040080 1.0kb upstream 1.0kb upstream 1000 false chr5: 17648635-17649634 Medicago truncatula
Medtr5g040080 1.0kb downstream 1.0kb downstream 3129 true chr5: 17649635-17652763 Medicago truncatula
Medtr5g040080 1.0kb downstream 1.0kb downstream 1000 false chr5: 17651764-17652763 Medicago truncatula
Medtr5g040080 2.0kb upstream 2.0kb upstream 4129 true chr5: 17647635-17651763 Medicago truncatula
Medtr5g040080 2.0kb upstream 2.0kb upstream 2000 false chr5: 17647635-17649634 Medicago truncatula
Medtr5g040080 2.0kb downstream 2.0kb downstream 4129 true chr5: 17649635-17653763 Medicago truncatula
Medtr5g040080 2.0kb downstream 2.0kb downstream 2000 false chr5: 17651764-17653763 Medicago truncatula
Medtr5g040080 5.0kb upstream 5.0kb upstream 7129 true chr5: 17644635-17651763 Medicago truncatula
Medtr5g040080 5.0kb upstream 5.0kb upstream 5000 false chr5: 17644635-17649634 Medicago truncatula
Medtr5g040080 5.0kb downstream 5.0kb downstream 7129 true chr5: 17649635-17656763 Medicago truncatula
Medtr5g040080 5.0kb downstream 5.0kb downstream 5000 false chr5: 17651764-17656763 Medicago truncatula
Medtr5g040080 10.0kb upstream 10.0kb upstream 12129 true chr5: 17639635-17651763 Medicago truncatula
Medtr5g040080 10.0kb upstream 10.0kb upstream 10000 false chr5: 17639635-17649634 Medicago truncatula
Medtr5g040080 10.0kb downstream 10.0kb downstream 12129 true chr5: 17649635-17661763 Medicago truncatula
Medtr5g040080 10.0kb downstream 10.0kb downstream 10000 false chr5: 17651764-17661763 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122295912 5265 Fabidae View MSA
124072489 5270 Rosid View MSA
123750067 5271 Pentapetalae View MSA
122795958 5272 Eudicot View MSA
122043476 5273 Angiosperm View MSA
121351771 5274 Embryophyte View MSA
123382314 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.122       Low
cufflinks 0.133       Low
cufflinks 0.204        
cufflinks 0.224        
cufflinks 0.214        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.185        
cufflinks 0.195        
cufflinks 0.234        

0 Strain