Gene : Medtr5g039530 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12300:SF51 - HVA22-LIKE PROTEIN C Description:  TB2/DP1, HVA22 family protein
Genomic Order:  2393 Name:  ? Medtr5g039530
Secondary Identifier:  ? PAC:31085482
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g039530 0.5kb upstream 0.5kb upstream 4202 true chr5: 17403365-17407566 Medicago truncatula
Medtr5g039530 0.5kb upstream 0.5kb upstream 500 false chr5: 17407067-17407566 Medicago truncatula
Medtr5g039530 0.5kb downstream 0.5kb downstream 4202 true chr5: 17402865-17407066 Medicago truncatula
Medtr5g039530 0.5kb downstream 0.5kb downstream 500 false chr5: 17402865-17403364 Medicago truncatula
Medtr5g039530 1.0kb upstream 1.0kb upstream 4702 true chr5: 17403365-17408066 Medicago truncatula
Medtr5g039530 1.0kb upstream 1.0kb upstream 1000 false chr5: 17407067-17408066 Medicago truncatula
Medtr5g039530 1.0kb downstream 1.0kb downstream 4702 true chr5: 17402365-17407066 Medicago truncatula
Medtr5g039530 1.0kb downstream 1.0kb downstream 1000 false chr5: 17402365-17403364 Medicago truncatula
Medtr5g039530 2.0kb upstream 2.0kb upstream 5702 true chr5: 17403365-17409066 Medicago truncatula
Medtr5g039530 2.0kb upstream 2.0kb upstream 2000 false chr5: 17407067-17409066 Medicago truncatula
Medtr5g039530 2.0kb downstream 2.0kb downstream 5702 true chr5: 17401365-17407066 Medicago truncatula
Medtr5g039530 2.0kb downstream 2.0kb downstream 2000 false chr5: 17401365-17403364 Medicago truncatula
Medtr5g039530 5.0kb upstream 5.0kb upstream 8702 true chr5: 17403365-17412066 Medicago truncatula
Medtr5g039530 5.0kb upstream 5.0kb upstream 5000 false chr5: 17407067-17412066 Medicago truncatula
Medtr5g039530 5.0kb downstream 5.0kb downstream 8702 true chr5: 17398365-17407066 Medicago truncatula
Medtr5g039530 5.0kb downstream 5.0kb downstream 5000 false chr5: 17398365-17403364 Medicago truncatula
Medtr5g039530 10.0kb upstream 10.0kb upstream 13702 true chr5: 17403365-17417066 Medicago truncatula
Medtr5g039530 10.0kb upstream 10.0kb upstream 10000 false chr5: 17407067-17417066 Medicago truncatula
Medtr5g039530 10.0kb downstream 10.0kb downstream 13702 true chr5: 17393365-17407066 Medicago truncatula
Medtr5g039530 10.0kb downstream 10.0kb downstream 10000 false chr5: 17393365-17403364 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311080 5265 Fabidae View MSA
124069874 5270 Rosid View MSA
123753411 5271 Pentapetalae View MSA
122797924 5272 Eudicot View MSA
122050358 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.442        
cufflinks 0.617        
cufflinks 0.368       Low
cufflinks 0.351       Low
cufflinks 0.76       High
cufflinks 0.509        
cufflinks 0.828       High
cufflinks 0.465        
cufflinks 0.704        

0 Strain