Gene : Medtr5g039440 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR35476:SF2 - MUCIN-RELATED PROTEIN Description:  mucin-like protein
Genomic Order:  2387 Name:  ? Medtr5g039440
Secondary Identifier:  ? PAC:31089588
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g039440 0.5kb upstream 0.5kb upstream 5820 true chr5: 17367289-17373108 Medicago truncatula
Medtr5g039440 0.5kb upstream 0.5kb upstream 500 false chr5: 17367289-17367788 Medicago truncatula
Medtr5g039440 0.5kb downstream 0.5kb downstream 5820 true chr5: 17367789-17373608 Medicago truncatula
Medtr5g039440 0.5kb downstream 0.5kb downstream 500 false chr5: 17373109-17373608 Medicago truncatula
Medtr5g039440 1.0kb upstream 1.0kb upstream 6320 true chr5: 17366789-17373108 Medicago truncatula
Medtr5g039440 1.0kb upstream 1.0kb upstream 1000 false chr5: 17366789-17367788 Medicago truncatula
Medtr5g039440 1.0kb downstream 1.0kb downstream 6320 true chr5: 17367789-17374108 Medicago truncatula
Medtr5g039440 1.0kb downstream 1.0kb downstream 1000 false chr5: 17373109-17374108 Medicago truncatula
Medtr5g039440 2.0kb upstream 2.0kb upstream 7320 true chr5: 17365789-17373108 Medicago truncatula
Medtr5g039440 2.0kb upstream 2.0kb upstream 2000 false chr5: 17365789-17367788 Medicago truncatula
Medtr5g039440 2.0kb downstream 2.0kb downstream 7320 true chr5: 17367789-17375108 Medicago truncatula
Medtr5g039440 2.0kb downstream 2.0kb downstream 2000 false chr5: 17373109-17375108 Medicago truncatula
Medtr5g039440 5.0kb upstream 5.0kb upstream 10320 true chr5: 17362789-17373108 Medicago truncatula
Medtr5g039440 5.0kb upstream 5.0kb upstream 5000 false chr5: 17362789-17367788 Medicago truncatula
Medtr5g039440 5.0kb downstream 5.0kb downstream 10320 true chr5: 17367789-17378108 Medicago truncatula
Medtr5g039440 5.0kb downstream 5.0kb downstream 5000 false chr5: 17373109-17378108 Medicago truncatula
Medtr5g039440 10.0kb upstream 10.0kb upstream 15320 true chr5: 17357789-17373108 Medicago truncatula
Medtr5g039440 10.0kb upstream 10.0kb upstream 10000 false chr5: 17357789-17367788 Medicago truncatula
Medtr5g039440 10.0kb downstream 10.0kb downstream 15320 true chr5: 17367789-17383108 Medicago truncatula
Medtr5g039440 10.0kb downstream 10.0kb downstream 10000 false chr5: 17373109-17383108 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041068 5273 Angiosperm View MSA
122300527 5265 Fabidae View MSA
124067494 5270 Rosid View MSA
123738952 5271 Pentapetalae View MSA
122792468 5272 Eudicot View MSA
121349473 5274 Embryophyte View MSA
123424597 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.678        
cufflinks 1.622        
cufflinks 1.912        
cufflinks 1.268        
cufflinks 2.117       High
cufflinks 0.892       Low
cufflinks 1.291        
cufflinks 1.724        
cufflinks 1.163        

0 Strain