Gene : Medtr5g042450 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  2557 Name:  ? Medtr5g042450
Secondary Identifier:  ? PAC:31087497
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g042450 0.5kb upstream 0.5kb upstream 8170 true chr5: 18660865-18669034 Medicago truncatula
Medtr5g042450 0.5kb upstream 0.5kb upstream 500 false chr5: 18668535-18669034 Medicago truncatula
Medtr5g042450 0.5kb downstream 0.5kb downstream 8170 true chr5: 18660365-18668534 Medicago truncatula
Medtr5g042450 0.5kb downstream 0.5kb downstream 500 false chr5: 18660365-18660864 Medicago truncatula
Medtr5g042450 1.0kb upstream 1.0kb upstream 8670 true chr5: 18660865-18669534 Medicago truncatula
Medtr5g042450 1.0kb upstream 1.0kb upstream 1000 false chr5: 18668535-18669534 Medicago truncatula
Medtr5g042450 1.0kb downstream 1.0kb downstream 8670 true chr5: 18659865-18668534 Medicago truncatula
Medtr5g042450 1.0kb downstream 1.0kb downstream 1000 false chr5: 18659865-18660864 Medicago truncatula
Medtr5g042450 2.0kb upstream 2.0kb upstream 9670 true chr5: 18660865-18670534 Medicago truncatula
Medtr5g042450 2.0kb upstream 2.0kb upstream 2000 false chr5: 18668535-18670534 Medicago truncatula
Medtr5g042450 2.0kb downstream 2.0kb downstream 9670 true chr5: 18658865-18668534 Medicago truncatula
Medtr5g042450 2.0kb downstream 2.0kb downstream 2000 false chr5: 18658865-18660864 Medicago truncatula
Medtr5g042450 5.0kb upstream 5.0kb upstream 12670 true chr5: 18660865-18673534 Medicago truncatula
Medtr5g042450 5.0kb upstream 5.0kb upstream 5000 false chr5: 18668535-18673534 Medicago truncatula
Medtr5g042450 5.0kb downstream 5.0kb downstream 12670 true chr5: 18655865-18668534 Medicago truncatula
Medtr5g042450 5.0kb downstream 5.0kb downstream 5000 false chr5: 18655865-18660864 Medicago truncatula
Medtr5g042450 10.0kb upstream 10.0kb upstream 17670 true chr5: 18660865-18678534 Medicago truncatula
Medtr5g042450 10.0kb upstream 10.0kb upstream 10000 false chr5: 18668535-18678534 Medicago truncatula
Medtr5g042450 10.0kb downstream 10.0kb downstream 17670 true chr5: 18650865-18668534 Medicago truncatula
Medtr5g042450 10.0kb downstream 10.0kb downstream 10000 false chr5: 18650865-18660864 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299130 5265 Fabidae View MSA
124066388 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.879        
cufflinks 1.061        
cufflinks 1.156        
cufflinks 0.255       Low
cufflinks 1.435       High
cufflinks 0.157       Low
cufflinks 0.482        
cufflinks 0.972        
cufflinks 0.349        

0 Strain