Gene : Medtr5g042530 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED Description:  vesicle transport V-SNARE protein amine-terminal protein
Genomic Order:  2562 Name:  ? Medtr5g042530
Secondary Identifier:  ? PAC:31084962
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g042530 0.5kb upstream 0.5kb upstream 6002 true chr5: 18686987-18692988 Medicago truncatula
Medtr5g042530 0.5kb upstream 0.5kb upstream 500 false chr5: 18692489-18692988 Medicago truncatula
Medtr5g042530 0.5kb downstream 0.5kb downstream 6002 true chr5: 18686487-18692488 Medicago truncatula
Medtr5g042530 0.5kb downstream 0.5kb downstream 500 false chr5: 18686487-18686986 Medicago truncatula
Medtr5g042530 1.0kb upstream 1.0kb upstream 6502 true chr5: 18686987-18693488 Medicago truncatula
Medtr5g042530 1.0kb upstream 1.0kb upstream 1000 false chr5: 18692489-18693488 Medicago truncatula
Medtr5g042530 1.0kb downstream 1.0kb downstream 6502 true chr5: 18685987-18692488 Medicago truncatula
Medtr5g042530 1.0kb downstream 1.0kb downstream 1000 false chr5: 18685987-18686986 Medicago truncatula
Medtr5g042530 2.0kb upstream 2.0kb upstream 7502 true chr5: 18686987-18694488 Medicago truncatula
Medtr5g042530 2.0kb upstream 2.0kb upstream 2000 false chr5: 18692489-18694488 Medicago truncatula
Medtr5g042530 2.0kb downstream 2.0kb downstream 7502 true chr5: 18684987-18692488 Medicago truncatula
Medtr5g042530 2.0kb downstream 2.0kb downstream 2000 false chr5: 18684987-18686986 Medicago truncatula
Medtr5g042530 5.0kb upstream 5.0kb upstream 10502 true chr5: 18686987-18697488 Medicago truncatula
Medtr5g042530 5.0kb upstream 5.0kb upstream 5000 false chr5: 18692489-18697488 Medicago truncatula
Medtr5g042530 5.0kb downstream 5.0kb downstream 10502 true chr5: 18681987-18692488 Medicago truncatula
Medtr5g042530 5.0kb downstream 5.0kb downstream 5000 false chr5: 18681987-18686986 Medicago truncatula
Medtr5g042530 10.0kb upstream 10.0kb upstream 15502 true chr5: 18686987-18702488 Medicago truncatula
Medtr5g042530 10.0kb upstream 10.0kb upstream 10000 false chr5: 18692489-18702488 Medicago truncatula
Medtr5g042530 10.0kb downstream 10.0kb downstream 15502 true chr5: 18676987-18692488 Medicago truncatula
Medtr5g042530 10.0kb downstream 10.0kb downstream 10000 false chr5: 18676987-18686986 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300139 5265 Fabidae View MSA
124061213 5270 Rosid View MSA
123741301 5271 Pentapetalae View MSA
122797628 5272 Eudicot View MSA
122045061 5273 Angiosperm View MSA
121345053 5274 Embryophyte View MSA
123428626 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.729       Low
cufflinks 1.324        
cufflinks 0.86        
cufflinks 1.315        
cufflinks 1.064        
cufflinks 0.672       Low
cufflinks 1.349        
cufflinks 0.962        
cufflinks 1.999       High

0 Strain