Gene : Medtr5g041900 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11615:SF81 - CASPARIAN STRIP MEMBRANE PROTEIN 5 Description:  casparian strip membrane protein
Genomic Order:  2521 Name:  ? Medtr5g041900
Secondary Identifier:  ? PAC:31086479
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g041900 0.5kb upstream 0.5kb upstream 2811 true chr5: 18398761-18401571 Medicago truncatula
Medtr5g041900 0.5kb upstream 0.5kb upstream 500 false chr5: 18398761-18399260 Medicago truncatula
Medtr5g041900 0.5kb downstream 0.5kb downstream 2811 true chr5: 18399261-18402071 Medicago truncatula
Medtr5g041900 0.5kb downstream 0.5kb downstream 500 false chr5: 18401572-18402071 Medicago truncatula
Medtr5g041900 1.0kb upstream 1.0kb upstream 3311 true chr5: 18398261-18401571 Medicago truncatula
Medtr5g041900 1.0kb upstream 1.0kb upstream 1000 false chr5: 18398261-18399260 Medicago truncatula
Medtr5g041900 1.0kb downstream 1.0kb downstream 3311 true chr5: 18399261-18402571 Medicago truncatula
Medtr5g041900 1.0kb downstream 1.0kb downstream 1000 false chr5: 18401572-18402571 Medicago truncatula
Medtr5g041900 2.0kb upstream 2.0kb upstream 4311 true chr5: 18397261-18401571 Medicago truncatula
Medtr5g041900 2.0kb upstream 2.0kb upstream 2000 false chr5: 18397261-18399260 Medicago truncatula
Medtr5g041900 2.0kb downstream 2.0kb downstream 4311 true chr5: 18399261-18403571 Medicago truncatula
Medtr5g041900 2.0kb downstream 2.0kb downstream 2000 false chr5: 18401572-18403571 Medicago truncatula
Medtr5g041900 5.0kb upstream 5.0kb upstream 7311 true chr5: 18394261-18401571 Medicago truncatula
Medtr5g041900 5.0kb upstream 5.0kb upstream 5000 false chr5: 18394261-18399260 Medicago truncatula
Medtr5g041900 5.0kb downstream 5.0kb downstream 7311 true chr5: 18399261-18406571 Medicago truncatula
Medtr5g041900 5.0kb downstream 5.0kb downstream 5000 false chr5: 18401572-18406571 Medicago truncatula
Medtr5g041900 10.0kb upstream 10.0kb upstream 12311 true chr5: 18389261-18401571 Medicago truncatula
Medtr5g041900 10.0kb upstream 10.0kb upstream 10000 false chr5: 18389261-18399260 Medicago truncatula
Medtr5g041900 10.0kb downstream 10.0kb downstream 12311 true chr5: 18399261-18411571 Medicago truncatula
Medtr5g041900 10.0kb downstream 10.0kb downstream 10000 false chr5: 18401572-18411571 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313827 5265 Fabidae View MSA
124050355 5270 Rosid View MSA
123746908 5271 Pentapetalae View MSA
122797470 5272 Eudicot View MSA
122046070 5273 Angiosperm View MSA
121351638 5274 Embryophyte View MSA
123382256 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.49        
cufflinks 0.006     Low Low
cufflinks 0.381        
cufflinks 0.64        
cufflinks 0.005     Low Low
cufflinks 3.171       High

0 Strain