Gene : Medtr5g041910 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR33399:SF5 - PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC Description:  oxygen-evolving enhancer protein
Genomic Order:  2522 Name:  ? Medtr5g041910
Secondary Identifier:  ? PAC:31088843
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g041910 0.5kb upstream 0.5kb upstream 2933 true chr5: 18401663-18404595 Medicago truncatula
Medtr5g041910 0.5kb upstream 0.5kb upstream 500 false chr5: 18404096-18404595 Medicago truncatula
Medtr5g041910 0.5kb downstream 0.5kb downstream 2933 true chr5: 18401163-18404095 Medicago truncatula
Medtr5g041910 0.5kb downstream 0.5kb downstream 500 false chr5: 18401163-18401662 Medicago truncatula
Medtr5g041910 1.0kb upstream 1.0kb upstream 3433 true chr5: 18401663-18405095 Medicago truncatula
Medtr5g041910 1.0kb upstream 1.0kb upstream 1000 false chr5: 18404096-18405095 Medicago truncatula
Medtr5g041910 1.0kb downstream 1.0kb downstream 3433 true chr5: 18400663-18404095 Medicago truncatula
Medtr5g041910 1.0kb downstream 1.0kb downstream 1000 false chr5: 18400663-18401662 Medicago truncatula
Medtr5g041910 2.0kb upstream 2.0kb upstream 4433 true chr5: 18401663-18406095 Medicago truncatula
Medtr5g041910 2.0kb upstream 2.0kb upstream 2000 false chr5: 18404096-18406095 Medicago truncatula
Medtr5g041910 2.0kb downstream 2.0kb downstream 4433 true chr5: 18399663-18404095 Medicago truncatula
Medtr5g041910 2.0kb downstream 2.0kb downstream 2000 false chr5: 18399663-18401662 Medicago truncatula
Medtr5g041910 5.0kb upstream 5.0kb upstream 7433 true chr5: 18401663-18409095 Medicago truncatula
Medtr5g041910 5.0kb upstream 5.0kb upstream 5000 false chr5: 18404096-18409095 Medicago truncatula
Medtr5g041910 5.0kb downstream 5.0kb downstream 7433 true chr5: 18396663-18404095 Medicago truncatula
Medtr5g041910 5.0kb downstream 5.0kb downstream 5000 false chr5: 18396663-18401662 Medicago truncatula
Medtr5g041910 10.0kb upstream 10.0kb upstream 12433 true chr5: 18401663-18414095 Medicago truncatula
Medtr5g041910 10.0kb upstream 10.0kb upstream 10000 false chr5: 18404096-18414095 Medicago truncatula
Medtr5g041910 10.0kb downstream 10.0kb downstream 12433 true chr5: 18391663-18404095 Medicago truncatula
Medtr5g041910 10.0kb downstream 10.0kb downstream 10000 false chr5: 18391663-18401662 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307362 5265 Fabidae View MSA
124061087 5270 Rosid View MSA
123739021 5271 Pentapetalae View MSA
122786264 5272 Eudicot View MSA
122043406 5273 Angiosperm View MSA
121310117 5274 Embryophyte View MSA
123347693 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 24.032     High  
cufflinks 13.603     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 44.106     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low Low
cufflinks 16.572     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain