Gene : Medtr5g029370 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Description:  transcription factor jumonji family protein
Genomic Order:  1733 Name:  ? Medtr5g029370
Secondary Identifier:  ? PAC:31085783
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g029370 0.5kb upstream 0.5kb upstream 7594 true chr5: 12300122-12307715 Medicago truncatula
Medtr5g029370 0.5kb upstream 0.5kb upstream 500 false chr5: 12300122-12300621 Medicago truncatula
Medtr5g029370 0.5kb downstream 0.5kb downstream 7594 true chr5: 12300622-12308215 Medicago truncatula
Medtr5g029370 0.5kb downstream 0.5kb downstream 500 false chr5: 12307716-12308215 Medicago truncatula
Medtr5g029370 1.0kb upstream 1.0kb upstream 8094 true chr5: 12299622-12307715 Medicago truncatula
Medtr5g029370 1.0kb upstream 1.0kb upstream 1000 false chr5: 12299622-12300621 Medicago truncatula
Medtr5g029370 1.0kb downstream 1.0kb downstream 8094 true chr5: 12300622-12308715 Medicago truncatula
Medtr5g029370 1.0kb downstream 1.0kb downstream 1000 false chr5: 12307716-12308715 Medicago truncatula
Medtr5g029370 2.0kb upstream 2.0kb upstream 9094 true chr5: 12298622-12307715 Medicago truncatula
Medtr5g029370 2.0kb upstream 2.0kb upstream 2000 false chr5: 12298622-12300621 Medicago truncatula
Medtr5g029370 2.0kb downstream 2.0kb downstream 9094 true chr5: 12300622-12309715 Medicago truncatula
Medtr5g029370 2.0kb downstream 2.0kb downstream 2000 false chr5: 12307716-12309715 Medicago truncatula
Medtr5g029370 5.0kb upstream 5.0kb upstream 12094 true chr5: 12295622-12307715 Medicago truncatula
Medtr5g029370 5.0kb upstream 5.0kb upstream 5000 false chr5: 12295622-12300621 Medicago truncatula
Medtr5g029370 5.0kb downstream 5.0kb downstream 12094 true chr5: 12300622-12312715 Medicago truncatula
Medtr5g029370 5.0kb downstream 5.0kb downstream 5000 false chr5: 12307716-12312715 Medicago truncatula
Medtr5g029370 10.0kb upstream 10.0kb upstream 17094 true chr5: 12290622-12307715 Medicago truncatula
Medtr5g029370 10.0kb upstream 10.0kb upstream 10000 false chr5: 12290622-12300621 Medicago truncatula
Medtr5g029370 10.0kb downstream 10.0kb downstream 17094 true chr5: 12300622-12317715 Medicago truncatula
Medtr5g029370 10.0kb downstream 10.0kb downstream 10000 false chr5: 12307716-12317715 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303310 5265 Fabidae View MSA
124063293 5270 Rosid View MSA
123753636 5271 Pentapetalae View MSA
122788405 5272 Eudicot View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.068     High High
cufflinks 1.488       Low
cufflinks 2.186        
cufflinks 4.422        
cufflinks 2.049        
cufflinks 7.826        
cufflinks 17.59     High High
cufflinks 1.314       Low
cufflinks 20.37     High High

0 Strain