Gene : Medtr5g030130 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31065:SF2 - PLATZ TRANSCRIPTION FACTOR DOMAIN-CONTAINING PROTEIN Description:  PLATZ transcription factor family protein
Genomic Order:  1788 Name:  ? Medtr5g030130
Secondary Identifier:  ? PAC:31085518
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g030130 0.5kb upstream 0.5kb upstream 3337 true chr5: 12665544-12668880 Medicago truncatula
Medtr5g030130 0.5kb upstream 0.5kb upstream 500 false chr5: 12668381-12668880 Medicago truncatula
Medtr5g030130 0.5kb downstream 0.5kb downstream 3337 true chr5: 12665044-12668380 Medicago truncatula
Medtr5g030130 0.5kb downstream 0.5kb downstream 500 false chr5: 12665044-12665543 Medicago truncatula
Medtr5g030130 1.0kb upstream 1.0kb upstream 3837 true chr5: 12665544-12669380 Medicago truncatula
Medtr5g030130 1.0kb upstream 1.0kb upstream 1000 false chr5: 12668381-12669380 Medicago truncatula
Medtr5g030130 1.0kb downstream 1.0kb downstream 3837 true chr5: 12664544-12668380 Medicago truncatula
Medtr5g030130 1.0kb downstream 1.0kb downstream 1000 false chr5: 12664544-12665543 Medicago truncatula
Medtr5g030130 2.0kb upstream 2.0kb upstream 4837 true chr5: 12665544-12670380 Medicago truncatula
Medtr5g030130 2.0kb upstream 2.0kb upstream 2000 false chr5: 12668381-12670380 Medicago truncatula
Medtr5g030130 2.0kb downstream 2.0kb downstream 4837 true chr5: 12663544-12668380 Medicago truncatula
Medtr5g030130 2.0kb downstream 2.0kb downstream 2000 false chr5: 12663544-12665543 Medicago truncatula
Medtr5g030130 5.0kb upstream 5.0kb upstream 7837 true chr5: 12665544-12673380 Medicago truncatula
Medtr5g030130 5.0kb upstream 5.0kb upstream 5000 false chr5: 12668381-12673380 Medicago truncatula
Medtr5g030130 5.0kb downstream 5.0kb downstream 7837 true chr5: 12660544-12668380 Medicago truncatula
Medtr5g030130 5.0kb downstream 5.0kb downstream 5000 false chr5: 12660544-12665543 Medicago truncatula
Medtr5g030130 10.0kb upstream 10.0kb upstream 12837 true chr5: 12665544-12678380 Medicago truncatula
Medtr5g030130 10.0kb upstream 10.0kb upstream 10000 false chr5: 12668381-12678380 Medicago truncatula
Medtr5g030130 10.0kb downstream 10.0kb downstream 12837 true chr5: 12655544-12668380 Medicago truncatula
Medtr5g030130 10.0kb downstream 10.0kb downstream 10000 false chr5: 12655544-12665543 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314113 5265 Fabidae View MSA
124073027 5270 Rosid View MSA
123750243 5271 Pentapetalae View MSA
122790111 5272 Eudicot View MSA
122049805 5273 Angiosperm View MSA
121349108 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.918     High High
cufflinks 36.492     High  
cufflinks 54.678     High  
cufflinks 23.704     High Low
cufflinks 47.966     High  
cufflinks 17.663     High Low
cufflinks 32.32     High  
cufflinks 55.992     High  
cufflinks 43.74     High  

0 Strain