Gene : Medtr5g029890 M. truncatula Mt4.0v1
Defline:  (1 of 3) KOG3140 - Predicted membrane protein Description:  SNARE associated family protein
Genomic Order:  1773 Name:  ? Medtr5g029890
Secondary Identifier:  ? PAC:31088015
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g029890 0.5kb upstream 0.5kb upstream 3987 true chr5: 12567708-12571694 Medicago truncatula
Medtr5g029890 0.5kb upstream 0.5kb upstream 500 false chr5: 12567708-12568207 Medicago truncatula
Medtr5g029890 0.5kb downstream 0.5kb downstream 3987 true chr5: 12568208-12572194 Medicago truncatula
Medtr5g029890 0.5kb downstream 0.5kb downstream 500 false chr5: 12571695-12572194 Medicago truncatula
Medtr5g029890 1.0kb upstream 1.0kb upstream 4487 true chr5: 12567208-12571694 Medicago truncatula
Medtr5g029890 1.0kb upstream 1.0kb upstream 1000 false chr5: 12567208-12568207 Medicago truncatula
Medtr5g029890 1.0kb downstream 1.0kb downstream 4487 true chr5: 12568208-12572694 Medicago truncatula
Medtr5g029890 1.0kb downstream 1.0kb downstream 1000 false chr5: 12571695-12572694 Medicago truncatula
Medtr5g029890 2.0kb upstream 2.0kb upstream 5487 true chr5: 12566208-12571694 Medicago truncatula
Medtr5g029890 2.0kb upstream 2.0kb upstream 2000 false chr5: 12566208-12568207 Medicago truncatula
Medtr5g029890 2.0kb downstream 2.0kb downstream 5487 true chr5: 12568208-12573694 Medicago truncatula
Medtr5g029890 2.0kb downstream 2.0kb downstream 2000 false chr5: 12571695-12573694 Medicago truncatula
Medtr5g029890 5.0kb upstream 5.0kb upstream 8487 true chr5: 12563208-12571694 Medicago truncatula
Medtr5g029890 5.0kb upstream 5.0kb upstream 5000 false chr5: 12563208-12568207 Medicago truncatula
Medtr5g029890 5.0kb downstream 5.0kb downstream 8487 true chr5: 12568208-12576694 Medicago truncatula
Medtr5g029890 5.0kb downstream 5.0kb downstream 5000 false chr5: 12571695-12576694 Medicago truncatula
Medtr5g029890 10.0kb upstream 10.0kb upstream 13487 true chr5: 12558208-12571694 Medicago truncatula
Medtr5g029890 10.0kb upstream 10.0kb upstream 10000 false chr5: 12558208-12568207 Medicago truncatula
Medtr5g029890 10.0kb downstream 10.0kb downstream 13487 true chr5: 12568208-12581694 Medicago truncatula
Medtr5g029890 10.0kb downstream 10.0kb downstream 10000 false chr5: 12571695-12581694 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300416 5265 Fabidae View MSA
124068758 5270 Rosid View MSA
123751002 5271 Pentapetalae View MSA
122793414 5272 Eudicot View MSA
122043784 5273 Angiosperm View MSA
121348714 5274 Embryophyte View MSA
123428145 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.857     High High
cufflinks 11.572     High  
cufflinks 22.142     High  
cufflinks 12.819     High  
cufflinks 17.004     High  
cufflinks 10.463       Low
cufflinks 14.96     High  
cufflinks 14.071     High  
cufflinks 16.926     High  

0 Strain