Gene : Medtr5g030950 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Description:  serine hydroxymethyltransferase
Genomic Order:  1848 Name:  ? Medtr5g030950
Secondary Identifier:  ? PAC:31085040
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-2161 Medicago truncatula pathologic  
Mtruncatula PWY-3841 Medicago truncatula pathologic  
Mtruncatula SER-GLYSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g030950 0.5kb upstream 0.5kb upstream 5736 true chr5: 13264124-13269859 Medicago truncatula
Medtr5g030950 0.5kb upstream 0.5kb upstream 500 false chr5: 13269360-13269859 Medicago truncatula
Medtr5g030950 0.5kb downstream 0.5kb downstream 5736 true chr5: 13263624-13269359 Medicago truncatula
Medtr5g030950 0.5kb downstream 0.5kb downstream 500 false chr5: 13263624-13264123 Medicago truncatula
Medtr5g030950 1.0kb upstream 1.0kb upstream 6236 true chr5: 13264124-13270359 Medicago truncatula
Medtr5g030950 1.0kb upstream 1.0kb upstream 1000 false chr5: 13269360-13270359 Medicago truncatula
Medtr5g030950 1.0kb downstream 1.0kb downstream 6236 true chr5: 13263124-13269359 Medicago truncatula
Medtr5g030950 1.0kb downstream 1.0kb downstream 1000 false chr5: 13263124-13264123 Medicago truncatula
Medtr5g030950 2.0kb upstream 2.0kb upstream 7236 true chr5: 13264124-13271359 Medicago truncatula
Medtr5g030950 2.0kb upstream 2.0kb upstream 2000 false chr5: 13269360-13271359 Medicago truncatula
Medtr5g030950 2.0kb downstream 2.0kb downstream 7236 true chr5: 13262124-13269359 Medicago truncatula
Medtr5g030950 2.0kb downstream 2.0kb downstream 2000 false chr5: 13262124-13264123 Medicago truncatula
Medtr5g030950 5.0kb upstream 5.0kb upstream 10236 true chr5: 13264124-13274359 Medicago truncatula
Medtr5g030950 5.0kb upstream 5.0kb upstream 5000 false chr5: 13269360-13274359 Medicago truncatula
Medtr5g030950 5.0kb downstream 5.0kb downstream 10236 true chr5: 13259124-13269359 Medicago truncatula
Medtr5g030950 5.0kb downstream 5.0kb downstream 5000 false chr5: 13259124-13264123 Medicago truncatula
Medtr5g030950 10.0kb upstream 10.0kb upstream 15236 true chr5: 13264124-13279359 Medicago truncatula
Medtr5g030950 10.0kb upstream 10.0kb upstream 10000 false chr5: 13269360-13279359 Medicago truncatula
Medtr5g030950 10.0kb downstream 10.0kb downstream 15236 true chr5: 13254124-13269359 Medicago truncatula
Medtr5g030950 10.0kb downstream 10.0kb downstream 10000 false chr5: 13254124-13264123 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.454       Low
cufflinks 443.954     High High
cufflinks 291.836     High  
cufflinks 2.626        
cufflinks 341.886     High High
cufflinks 2.51        
cufflinks 3.087        
cufflinks 373.549     High High
cufflinks 2.984        

0 Strain