Gene : Medtr5g034050 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23431:SF2 - DNA-DIRECTED RNA POLYMERASES II, IV AND V SUBUNIT 10 Description:  DNA-directed RNA polymerase II 8.2 kDa protein
Genomic Order:  2046 Name:  ? Medtr5g034050
Secondary Identifier:  ? PAC:31089337
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g034050 0.5kb upstream 0.5kb upstream 4254 true chr5: 14713333-14717586 Medicago truncatula
Medtr5g034050 0.5kb upstream 0.5kb upstream 500 false chr5: 14717087-14717586 Medicago truncatula
Medtr5g034050 0.5kb downstream 0.5kb downstream 4254 true chr5: 14712833-14717086 Medicago truncatula
Medtr5g034050 0.5kb downstream 0.5kb downstream 500 false chr5: 14712833-14713332 Medicago truncatula
Medtr5g034050 1.0kb upstream 1.0kb upstream 4754 true chr5: 14713333-14718086 Medicago truncatula
Medtr5g034050 1.0kb upstream 1.0kb upstream 1000 false chr5: 14717087-14718086 Medicago truncatula
Medtr5g034050 1.0kb downstream 1.0kb downstream 4754 true chr5: 14712333-14717086 Medicago truncatula
Medtr5g034050 1.0kb downstream 1.0kb downstream 1000 false chr5: 14712333-14713332 Medicago truncatula
Medtr5g034050 2.0kb upstream 2.0kb upstream 5754 true chr5: 14713333-14719086 Medicago truncatula
Medtr5g034050 2.0kb upstream 2.0kb upstream 2000 false chr5: 14717087-14719086 Medicago truncatula
Medtr5g034050 2.0kb downstream 2.0kb downstream 5754 true chr5: 14711333-14717086 Medicago truncatula
Medtr5g034050 2.0kb downstream 2.0kb downstream 2000 false chr5: 14711333-14713332 Medicago truncatula
Medtr5g034050 5.0kb upstream 5.0kb upstream 8754 true chr5: 14713333-14722086 Medicago truncatula
Medtr5g034050 5.0kb upstream 5.0kb upstream 5000 false chr5: 14717087-14722086 Medicago truncatula
Medtr5g034050 5.0kb downstream 5.0kb downstream 8754 true chr5: 14708333-14717086 Medicago truncatula
Medtr5g034050 5.0kb downstream 5.0kb downstream 5000 false chr5: 14708333-14713332 Medicago truncatula
Medtr5g034050 10.0kb upstream 10.0kb upstream 13754 true chr5: 14713333-14727086 Medicago truncatula
Medtr5g034050 10.0kb upstream 10.0kb upstream 10000 false chr5: 14717087-14727086 Medicago truncatula
Medtr5g034050 10.0kb downstream 10.0kb downstream 13754 true chr5: 14703333-14717086 Medicago truncatula
Medtr5g034050 10.0kb downstream 10.0kb downstream 10000 false chr5: 14703333-14713332 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300083 5265 Fabidae View MSA
124064582 5270 Rosid View MSA
123736869 5271 Pentapetalae View MSA
122788474 5272 Eudicot View MSA
122046178 5273 Angiosperm View MSA
121344110 5274 Embryophyte View MSA
123424802 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.663        
cufflinks 2.418       Low
cufflinks 2.803        
cufflinks 5.813       High
cufflinks 3.777        
cufflinks 5.106        
cufflinks 5.459       High
cufflinks 2.353       Low
cufflinks 3.712        

0 Strain