Gene : Medtr5g032820 M. truncatula Mt4.0v1
Defline:  (1 of 209) PF00847 - AP2 domain (AP2) Description:  AP2 domain class transcription factor
Genomic Order:  1967 Name:  ? Medtr5g032820
Secondary Identifier:  ? PAC:31085749
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g032820 0.5kb upstream 0.5kb upstream 1589 true chr5: 14157935-14159523 Medicago truncatula
Medtr5g032820 0.5kb upstream 0.5kb upstream 500 false chr5: 14157935-14158434 Medicago truncatula
Medtr5g032820 0.5kb downstream 0.5kb downstream 1589 true chr5: 14158435-14160023 Medicago truncatula
Medtr5g032820 0.5kb downstream 0.5kb downstream 500 false chr5: 14159524-14160023 Medicago truncatula
Medtr5g032820 1.0kb upstream 1.0kb upstream 2089 true chr5: 14157435-14159523 Medicago truncatula
Medtr5g032820 1.0kb upstream 1.0kb upstream 1000 false chr5: 14157435-14158434 Medicago truncatula
Medtr5g032820 1.0kb downstream 1.0kb downstream 2089 true chr5: 14158435-14160523 Medicago truncatula
Medtr5g032820 1.0kb downstream 1.0kb downstream 1000 false chr5: 14159524-14160523 Medicago truncatula
Medtr5g032820 2.0kb upstream 2.0kb upstream 3089 true chr5: 14156435-14159523 Medicago truncatula
Medtr5g032820 2.0kb upstream 2.0kb upstream 2000 false chr5: 14156435-14158434 Medicago truncatula
Medtr5g032820 2.0kb downstream 2.0kb downstream 3089 true chr5: 14158435-14161523 Medicago truncatula
Medtr5g032820 2.0kb downstream 2.0kb downstream 2000 false chr5: 14159524-14161523 Medicago truncatula
Medtr5g032820 5.0kb upstream 5.0kb upstream 6089 true chr5: 14153435-14159523 Medicago truncatula
Medtr5g032820 5.0kb upstream 5.0kb upstream 5000 false chr5: 14153435-14158434 Medicago truncatula
Medtr5g032820 5.0kb downstream 5.0kb downstream 6089 true chr5: 14158435-14164523 Medicago truncatula
Medtr5g032820 5.0kb downstream 5.0kb downstream 5000 false chr5: 14159524-14164523 Medicago truncatula
Medtr5g032820 10.0kb upstream 10.0kb upstream 11089 true chr5: 14148435-14159523 Medicago truncatula
Medtr5g032820 10.0kb upstream 10.0kb upstream 10000 false chr5: 14148435-14158434 Medicago truncatula
Medtr5g032820 10.0kb downstream 10.0kb downstream 11089 true chr5: 14158435-14169523 Medicago truncatula
Medtr5g032820 10.0kb downstream 10.0kb downstream 10000 false chr5: 14159524-14169523 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310690 5265 Fabidae View MSA
124069333 5270 Rosid View MSA
123742197 5271 Pentapetalae View MSA
122797344 5272 Eudicot View MSA
122048706 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low Low
cufflinks 0.037     Low  
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low  
cufflinks 0.061     Low High

0 Strain