Gene : Medtr5g034470 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR11558:SF25 - SPERMINE SYNTHASE Description:  spermidine synthase
Genomic Order:  2076 Name:  ? Medtr5g034470
Secondary Identifier:  ? PAC:31086669
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula BSUBPOLYAMSYN-PWY Medicago truncatula pathologic  
Mtruncatula POLYAMINSYN3-PWY Medicago truncatula pathologic  
Mtruncatula PWY-7528 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g034470 0.5kb upstream 0.5kb upstream 5720 true chr5: 14952137-14957856 Medicago truncatula
Medtr5g034470 0.5kb upstream 0.5kb upstream 500 false chr5: 14952137-14952636 Medicago truncatula
Medtr5g034470 0.5kb downstream 0.5kb downstream 5720 true chr5: 14952637-14958356 Medicago truncatula
Medtr5g034470 0.5kb downstream 0.5kb downstream 500 false chr5: 14957857-14958356 Medicago truncatula
Medtr5g034470 1.0kb upstream 1.0kb upstream 6220 true chr5: 14951637-14957856 Medicago truncatula
Medtr5g034470 1.0kb upstream 1.0kb upstream 1000 false chr5: 14951637-14952636 Medicago truncatula
Medtr5g034470 1.0kb downstream 1.0kb downstream 6220 true chr5: 14952637-14958856 Medicago truncatula
Medtr5g034470 1.0kb downstream 1.0kb downstream 1000 false chr5: 14957857-14958856 Medicago truncatula
Medtr5g034470 2.0kb upstream 2.0kb upstream 7220 true chr5: 14950637-14957856 Medicago truncatula
Medtr5g034470 2.0kb upstream 2.0kb upstream 2000 false chr5: 14950637-14952636 Medicago truncatula
Medtr5g034470 2.0kb downstream 2.0kb downstream 7220 true chr5: 14952637-14959856 Medicago truncatula
Medtr5g034470 2.0kb downstream 2.0kb downstream 2000 false chr5: 14957857-14959856 Medicago truncatula
Medtr5g034470 5.0kb upstream 5.0kb upstream 10220 true chr5: 14947637-14957856 Medicago truncatula
Medtr5g034470 5.0kb upstream 5.0kb upstream 5000 false chr5: 14947637-14952636 Medicago truncatula
Medtr5g034470 5.0kb downstream 5.0kb downstream 10220 true chr5: 14952637-14962856 Medicago truncatula
Medtr5g034470 5.0kb downstream 5.0kb downstream 5000 false chr5: 14957857-14962856 Medicago truncatula
Medtr5g034470 10.0kb upstream 10.0kb upstream 15220 true chr5: 14942637-14957856 Medicago truncatula
Medtr5g034470 10.0kb upstream 10.0kb upstream 10000 false chr5: 14942637-14952636 Medicago truncatula
Medtr5g034470 10.0kb downstream 10.0kb downstream 15220 true chr5: 14952637-14967856 Medicago truncatula
Medtr5g034470 10.0kb downstream 10.0kb downstream 10000 false chr5: 14957857-14967856 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.298       Low
cufflinks 5.651        
cufflinks 4.251        
cufflinks 7.356       High
cufflinks 9.089       High
cufflinks 2.845       Low
cufflinks 4.511        
cufflinks 4.745        
cufflinks 6.081        

0 Strain