Gene : Medtr5g034320 M. truncatula Mt4.0v1
Defline:  (1 of 52) PF03181 - BURP domain (BURP) Description:  polygalacturonase non-catalytic protein
Genomic Order:  2066 Name:  ? Medtr5g034320
Secondary Identifier:  ? PAC:31091758
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g034320 0.5kb upstream 0.5kb upstream 3350 true chr5: 14863731-14867080 Medicago truncatula
Medtr5g034320 0.5kb upstream 0.5kb upstream 500 false chr5: 14863731-14864230 Medicago truncatula
Medtr5g034320 0.5kb downstream 0.5kb downstream 3350 true chr5: 14864231-14867580 Medicago truncatula
Medtr5g034320 0.5kb downstream 0.5kb downstream 500 false chr5: 14867081-14867580 Medicago truncatula
Medtr5g034320 1.0kb upstream 1.0kb upstream 3850 true chr5: 14863231-14867080 Medicago truncatula
Medtr5g034320 1.0kb upstream 1.0kb upstream 1000 false chr5: 14863231-14864230 Medicago truncatula
Medtr5g034320 1.0kb downstream 1.0kb downstream 3850 true chr5: 14864231-14868080 Medicago truncatula
Medtr5g034320 1.0kb downstream 1.0kb downstream 1000 false chr5: 14867081-14868080 Medicago truncatula
Medtr5g034320 2.0kb upstream 2.0kb upstream 4850 true chr5: 14862231-14867080 Medicago truncatula
Medtr5g034320 2.0kb upstream 2.0kb upstream 2000 false chr5: 14862231-14864230 Medicago truncatula
Medtr5g034320 2.0kb downstream 2.0kb downstream 4850 true chr5: 14864231-14869080 Medicago truncatula
Medtr5g034320 2.0kb downstream 2.0kb downstream 2000 false chr5: 14867081-14869080 Medicago truncatula
Medtr5g034320 5.0kb upstream 5.0kb upstream 7850 true chr5: 14859231-14867080 Medicago truncatula
Medtr5g034320 5.0kb upstream 5.0kb upstream 5000 false chr5: 14859231-14864230 Medicago truncatula
Medtr5g034320 5.0kb downstream 5.0kb downstream 7850 true chr5: 14864231-14872080 Medicago truncatula
Medtr5g034320 5.0kb downstream 5.0kb downstream 5000 false chr5: 14867081-14872080 Medicago truncatula
Medtr5g034320 10.0kb upstream 10.0kb upstream 12850 true chr5: 14854231-14867080 Medicago truncatula
Medtr5g034320 10.0kb upstream 10.0kb upstream 10000 false chr5: 14854231-14864230 Medicago truncatula
Medtr5g034320 10.0kb downstream 10.0kb downstream 12850 true chr5: 14864231-14877080 Medicago truncatula
Medtr5g034320 10.0kb downstream 10.0kb downstream 10000 false chr5: 14867081-14877080 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299341 5265 Fabidae View MSA
124060515 5270 Rosid View MSA
123747690 5271 Pentapetalae View MSA
122795038 5272 Eudicot View MSA
122050223 5273 Angiosperm View MSA
121351029 5274 Embryophyte View MSA
123381981 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.51        
cufflinks 19.313     High  
cufflinks 20.233     High  
cufflinks 0.471       Low
cufflinks 28.983     High High
cufflinks 0.399       Low
cufflinks 1.522        
cufflinks 18.297     High  
cufflinks 2.459        

0 Strain