Gene : Medtr5g087560 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11353:SF22 - T-COMPLEX PROTEIN 1 SUBUNIT ETA Description:  TCP-1/cpn60 chaperonin family protein
Genomic Order:  4931 Name:  ? Medtr5g087560
Secondary Identifier:  ? PAC:31091298
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g087560 0.5kb upstream 0.5kb upstream 9458 true chr5: 37953066-37962523 Medicago truncatula
Medtr5g087560 0.5kb upstream 0.5kb upstream 500 false chr5: 37953066-37953565 Medicago truncatula
Medtr5g087560 0.5kb downstream 0.5kb downstream 9458 true chr5: 37953566-37963023 Medicago truncatula
Medtr5g087560 0.5kb downstream 0.5kb downstream 500 false chr5: 37962524-37963023 Medicago truncatula
Medtr5g087560 1.0kb upstream 1.0kb upstream 9958 true chr5: 37952566-37962523 Medicago truncatula
Medtr5g087560 1.0kb upstream 1.0kb upstream 1000 false chr5: 37952566-37953565 Medicago truncatula
Medtr5g087560 1.0kb downstream 1.0kb downstream 9958 true chr5: 37953566-37963523 Medicago truncatula
Medtr5g087560 1.0kb downstream 1.0kb downstream 1000 false chr5: 37962524-37963523 Medicago truncatula
Medtr5g087560 2.0kb upstream 2.0kb upstream 10958 true chr5: 37951566-37962523 Medicago truncatula
Medtr5g087560 2.0kb upstream 2.0kb upstream 2000 false chr5: 37951566-37953565 Medicago truncatula
Medtr5g087560 2.0kb downstream 2.0kb downstream 10958 true chr5: 37953566-37964523 Medicago truncatula
Medtr5g087560 2.0kb downstream 2.0kb downstream 2000 false chr5: 37962524-37964523 Medicago truncatula
Medtr5g087560 5.0kb upstream 5.0kb upstream 13958 true chr5: 37948566-37962523 Medicago truncatula
Medtr5g087560 5.0kb upstream 5.0kb upstream 5000 false chr5: 37948566-37953565 Medicago truncatula
Medtr5g087560 5.0kb downstream 5.0kb downstream 13958 true chr5: 37953566-37967523 Medicago truncatula
Medtr5g087560 5.0kb downstream 5.0kb downstream 5000 false chr5: 37962524-37967523 Medicago truncatula
Medtr5g087560 10.0kb upstream 10.0kb upstream 18958 true chr5: 37943566-37962523 Medicago truncatula
Medtr5g087560 10.0kb upstream 10.0kb upstream 10000 false chr5: 37943566-37953565 Medicago truncatula
Medtr5g087560 10.0kb downstream 10.0kb downstream 18958 true chr5: 37953566-37972523 Medicago truncatula
Medtr5g087560 10.0kb downstream 10.0kb downstream 10000 false chr5: 37962524-37972523 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309028 5265 Fabidae View MSA
124061820 5270 Rosid View MSA
123739325 5271 Pentapetalae View MSA
122789576 5272 Eudicot View MSA
122049781 5273 Angiosperm View MSA
121344001 5274 Embryophyte View MSA
123424590 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.48        
cufflinks 4.333        
cufflinks 3.626        
cufflinks 4.069        
cufflinks 8.356       High
cufflinks 2.547       Low
cufflinks 5.003        
cufflinks 3.597        
cufflinks 9.3       High

0 Strain