Gene : Medtr5g087520 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG2874 - rRNA processing protein Description:  KRR1 small subunit processome component
Genomic Order:  4927 Name:  ? Medtr5g087520
Secondary Identifier:  ? PAC:31084942
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g087520 0.5kb upstream 0.5kb upstream 5753 true chr5: 37927631-37933383 Medicago truncatula
Medtr5g087520 0.5kb upstream 0.5kb upstream 500 false chr5: 37927631-37928130 Medicago truncatula
Medtr5g087520 0.5kb downstream 0.5kb downstream 5753 true chr5: 37928131-37933883 Medicago truncatula
Medtr5g087520 0.5kb downstream 0.5kb downstream 500 false chr5: 37933384-37933883 Medicago truncatula
Medtr5g087520 1.0kb upstream 1.0kb upstream 6253 true chr5: 37927131-37933383 Medicago truncatula
Medtr5g087520 1.0kb upstream 1.0kb upstream 1000 false chr5: 37927131-37928130 Medicago truncatula
Medtr5g087520 1.0kb downstream 1.0kb downstream 6253 true chr5: 37928131-37934383 Medicago truncatula
Medtr5g087520 1.0kb downstream 1.0kb downstream 1000 false chr5: 37933384-37934383 Medicago truncatula
Medtr5g087520 2.0kb upstream 2.0kb upstream 7253 true chr5: 37926131-37933383 Medicago truncatula
Medtr5g087520 2.0kb upstream 2.0kb upstream 2000 false chr5: 37926131-37928130 Medicago truncatula
Medtr5g087520 2.0kb downstream 2.0kb downstream 7253 true chr5: 37928131-37935383 Medicago truncatula
Medtr5g087520 2.0kb downstream 2.0kb downstream 2000 false chr5: 37933384-37935383 Medicago truncatula
Medtr5g087520 5.0kb upstream 5.0kb upstream 10253 true chr5: 37923131-37933383 Medicago truncatula
Medtr5g087520 5.0kb upstream 5.0kb upstream 5000 false chr5: 37923131-37928130 Medicago truncatula
Medtr5g087520 5.0kb downstream 5.0kb downstream 10253 true chr5: 37928131-37938383 Medicago truncatula
Medtr5g087520 5.0kb downstream 5.0kb downstream 5000 false chr5: 37933384-37938383 Medicago truncatula
Medtr5g087520 10.0kb upstream 10.0kb upstream 15253 true chr5: 37918131-37933383 Medicago truncatula
Medtr5g087520 10.0kb upstream 10.0kb upstream 10000 false chr5: 37918131-37928130 Medicago truncatula
Medtr5g087520 10.0kb downstream 10.0kb downstream 15253 true chr5: 37928131-37943383 Medicago truncatula
Medtr5g087520 10.0kb downstream 10.0kb downstream 10000 false chr5: 37933384-37943383 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304580 5265 Fabidae View MSA
124064553 5270 Rosid View MSA
123738984 5271 Pentapetalae View MSA
122790120 5272 Eudicot View MSA
122041852 5273 Angiosperm View MSA
121344485 5274 Embryophyte View MSA
123424552 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.021        
cufflinks 1.277        
cufflinks 1.594        
cufflinks 1.085        
cufflinks 2.197       High
cufflinks 0.632       Low
cufflinks 1.641        
cufflinks 1.463        
cufflinks 1.448        

0 Strain