Gene : Medtr5g087870 M. truncatula Mt4.0v1
Defline:  (1 of 7) PTHR22891:SF20 - PROTEIN ARGONAUTE 4-RELATED Description:  eukaryotic translation initiation factor 2c, putative
Genomic Order:  4957 Name:  ? Medtr5g087870
Secondary Identifier:  ? PAC:31089349
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g087870 0.5kb upstream 0.5kb upstream 9821 true chr5: 38109474-38119294 Medicago truncatula
Medtr5g087870 0.5kb upstream 0.5kb upstream 500 false chr5: 38109474-38109973 Medicago truncatula
Medtr5g087870 0.5kb downstream 0.5kb downstream 9821 true chr5: 38109974-38119794 Medicago truncatula
Medtr5g087870 0.5kb downstream 0.5kb downstream 500 false chr5: 38119295-38119794 Medicago truncatula
Medtr5g087870 1.0kb upstream 1.0kb upstream 10321 true chr5: 38108974-38119294 Medicago truncatula
Medtr5g087870 1.0kb upstream 1.0kb upstream 1000 false chr5: 38108974-38109973 Medicago truncatula
Medtr5g087870 1.0kb downstream 1.0kb downstream 10321 true chr5: 38109974-38120294 Medicago truncatula
Medtr5g087870 1.0kb downstream 1.0kb downstream 1000 false chr5: 38119295-38120294 Medicago truncatula
Medtr5g087870 2.0kb upstream 2.0kb upstream 11321 true chr5: 38107974-38119294 Medicago truncatula
Medtr5g087870 2.0kb upstream 2.0kb upstream 2000 false chr5: 38107974-38109973 Medicago truncatula
Medtr5g087870 2.0kb downstream 2.0kb downstream 11321 true chr5: 38109974-38121294 Medicago truncatula
Medtr5g087870 2.0kb downstream 2.0kb downstream 2000 false chr5: 38119295-38121294 Medicago truncatula
Medtr5g087870 5.0kb upstream 5.0kb upstream 14321 true chr5: 38104974-38119294 Medicago truncatula
Medtr5g087870 5.0kb upstream 5.0kb upstream 5000 false chr5: 38104974-38109973 Medicago truncatula
Medtr5g087870 5.0kb downstream 5.0kb downstream 14321 true chr5: 38109974-38124294 Medicago truncatula
Medtr5g087870 5.0kb downstream 5.0kb downstream 5000 false chr5: 38119295-38124294 Medicago truncatula
Medtr5g087870 10.0kb upstream 10.0kb upstream 19321 true chr5: 38099974-38119294 Medicago truncatula
Medtr5g087870 10.0kb upstream 10.0kb upstream 10000 false chr5: 38099974-38109973 Medicago truncatula
Medtr5g087870 10.0kb downstream 10.0kb downstream 19321 true chr5: 38109974-38129294 Medicago truncatula
Medtr5g087870 10.0kb downstream 10.0kb downstream 10000 false chr5: 38119295-38129294 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309915 5265 Fabidae View MSA
124060995 5270 Rosid View MSA
123750944 5271 Pentapetalae View MSA
122796647 5272 Eudicot View MSA
122050518 5273 Angiosperm View MSA
121349761 5274 Embryophyte View MSA
123381432 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.924        
cufflinks 4.919        
cufflinks 4.173        
cufflinks 5.493        
cufflinks 8.213        
cufflinks 1.739       Low
cufflinks 4.972        
cufflinks 4.166        
cufflinks 12.892     High High

0 Strain