Gene : Medtr5g087760 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31852:SF0 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Description:  late embryogenesis abundant hydroxyproline-rich glycoprotein
Genomic Order:  4947 Name:  ? Medtr5g087760
Secondary Identifier:  ? PAC:31084946
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g087760 0.5kb upstream 0.5kb upstream 1868 true chr5: 38058037-38059904 Medicago truncatula
Medtr5g087760 0.5kb upstream 0.5kb upstream 500 false chr5: 38059405-38059904 Medicago truncatula
Medtr5g087760 0.5kb downstream 0.5kb downstream 1868 true chr5: 38057537-38059404 Medicago truncatula
Medtr5g087760 0.5kb downstream 0.5kb downstream 500 false chr5: 38057537-38058036 Medicago truncatula
Medtr5g087760 1.0kb upstream 1.0kb upstream 2368 true chr5: 38058037-38060404 Medicago truncatula
Medtr5g087760 1.0kb upstream 1.0kb upstream 1000 false chr5: 38059405-38060404 Medicago truncatula
Medtr5g087760 1.0kb downstream 1.0kb downstream 2368 true chr5: 38057037-38059404 Medicago truncatula
Medtr5g087760 1.0kb downstream 1.0kb downstream 1000 false chr5: 38057037-38058036 Medicago truncatula
Medtr5g087760 2.0kb upstream 2.0kb upstream 3368 true chr5: 38058037-38061404 Medicago truncatula
Medtr5g087760 2.0kb upstream 2.0kb upstream 2000 false chr5: 38059405-38061404 Medicago truncatula
Medtr5g087760 2.0kb downstream 2.0kb downstream 3368 true chr5: 38056037-38059404 Medicago truncatula
Medtr5g087760 2.0kb downstream 2.0kb downstream 2000 false chr5: 38056037-38058036 Medicago truncatula
Medtr5g087760 5.0kb upstream 5.0kb upstream 6368 true chr5: 38058037-38064404 Medicago truncatula
Medtr5g087760 5.0kb upstream 5.0kb upstream 5000 false chr5: 38059405-38064404 Medicago truncatula
Medtr5g087760 5.0kb downstream 5.0kb downstream 6368 true chr5: 38053037-38059404 Medicago truncatula
Medtr5g087760 5.0kb downstream 5.0kb downstream 5000 false chr5: 38053037-38058036 Medicago truncatula
Medtr5g087760 10.0kb upstream 10.0kb upstream 11368 true chr5: 38058037-38069404 Medicago truncatula
Medtr5g087760 10.0kb upstream 10.0kb upstream 10000 false chr5: 38059405-38069404 Medicago truncatula
Medtr5g087760 10.0kb downstream 10.0kb downstream 11368 true chr5: 38048037-38059404 Medicago truncatula
Medtr5g087760 10.0kb downstream 10.0kb downstream 10000 false chr5: 38048037-38058036 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299049 5265 Fabidae View MSA
124061418 5270 Rosid View MSA
123742078 5271 Pentapetalae View MSA
122788444 5272 Eudicot View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.229     High  
cufflinks 1.558       Low
cufflinks 5.964        
cufflinks 25.274     High  
cufflinks 0.727       Low
cufflinks 150.562     High High
cufflinks 83.015     High  
cufflinks 4.0        
cufflinks 137.717     High High

0 Strain