Gene : Medtr5g087700 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.3.1.83 - Geranylgeranyl diphosphate reductase / Geranylgeranyl reductase Description:  pyridine nucleotide-disulfide oxidoreductase
Genomic Order:  4941 Name:  ? Medtr5g087700
Secondary Identifier:  ? PAC:31085952
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5063 Medicago truncatula pathologic  
Mtruncatula PWY-5064 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g087700 0.5kb upstream 0.5kb upstream 2617 true chr5: 38024502-38027118 Medicago truncatula
Medtr5g087700 0.5kb upstream 0.5kb upstream 500 false chr5: 38024502-38025001 Medicago truncatula
Medtr5g087700 0.5kb downstream 0.5kb downstream 2617 true chr5: 38025002-38027618 Medicago truncatula
Medtr5g087700 0.5kb downstream 0.5kb downstream 500 false chr5: 38027119-38027618 Medicago truncatula
Medtr5g087700 1.0kb upstream 1.0kb upstream 3117 true chr5: 38024002-38027118 Medicago truncatula
Medtr5g087700 1.0kb upstream 1.0kb upstream 1000 false chr5: 38024002-38025001 Medicago truncatula
Medtr5g087700 1.0kb downstream 1.0kb downstream 3117 true chr5: 38025002-38028118 Medicago truncatula
Medtr5g087700 1.0kb downstream 1.0kb downstream 1000 false chr5: 38027119-38028118 Medicago truncatula
Medtr5g087700 2.0kb upstream 2.0kb upstream 4117 true chr5: 38023002-38027118 Medicago truncatula
Medtr5g087700 2.0kb upstream 2.0kb upstream 2000 false chr5: 38023002-38025001 Medicago truncatula
Medtr5g087700 2.0kb downstream 2.0kb downstream 4117 true chr5: 38025002-38029118 Medicago truncatula
Medtr5g087700 2.0kb downstream 2.0kb downstream 2000 false chr5: 38027119-38029118 Medicago truncatula
Medtr5g087700 5.0kb upstream 5.0kb upstream 7117 true chr5: 38020002-38027118 Medicago truncatula
Medtr5g087700 5.0kb upstream 5.0kb upstream 5000 false chr5: 38020002-38025001 Medicago truncatula
Medtr5g087700 5.0kb downstream 5.0kb downstream 7117 true chr5: 38025002-38032118 Medicago truncatula
Medtr5g087700 5.0kb downstream 5.0kb downstream 5000 false chr5: 38027119-38032118 Medicago truncatula
Medtr5g087700 10.0kb upstream 10.0kb upstream 12117 true chr5: 38015002-38027118 Medicago truncatula
Medtr5g087700 10.0kb upstream 10.0kb upstream 10000 false chr5: 38015002-38025001 Medicago truncatula
Medtr5g087700 10.0kb downstream 10.0kb downstream 12117 true chr5: 38025002-38037118 Medicago truncatula
Medtr5g087700 10.0kb downstream 10.0kb downstream 10000 false chr5: 38027119-38037118 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304518 5265 Fabidae View MSA
124070478 5270 Rosid View MSA
123742493 5271 Pentapetalae View MSA
122794040 5272 Eudicot View MSA
122041542 5273 Angiosperm View MSA
121345615 5274 Embryophyte View MSA
123424772 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.86        
cufflinks 0.445       Low
cufflinks 0.61        
cufflinks 3.047       High
cufflinks 0.642        
cufflinks 4.611       High
cufflinks 1.013        
cufflinks 0.481        
cufflinks 3.541       High

0 Strain