Gene : Medtr5g090170 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  5137 Name:  ? Medtr5g090170
Secondary Identifier:  ? PAC:31091465
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g090170 0.5kb upstream 0.5kb upstream 5411 true chr5: 39277907-39283317 Medicago truncatula
Medtr5g090170 0.5kb upstream 0.5kb upstream 500 false chr5: 39277907-39278406 Medicago truncatula
Medtr5g090170 0.5kb downstream 0.5kb downstream 5411 true chr5: 39278407-39283817 Medicago truncatula
Medtr5g090170 0.5kb downstream 0.5kb downstream 500 false chr5: 39283318-39283817 Medicago truncatula
Medtr5g090170 1.0kb upstream 1.0kb upstream 5911 true chr5: 39277407-39283317 Medicago truncatula
Medtr5g090170 1.0kb upstream 1.0kb upstream 1000 false chr5: 39277407-39278406 Medicago truncatula
Medtr5g090170 1.0kb downstream 1.0kb downstream 5911 true chr5: 39278407-39284317 Medicago truncatula
Medtr5g090170 1.0kb downstream 1.0kb downstream 1000 false chr5: 39283318-39284317 Medicago truncatula
Medtr5g090170 2.0kb upstream 2.0kb upstream 6911 true chr5: 39276407-39283317 Medicago truncatula
Medtr5g090170 2.0kb upstream 2.0kb upstream 2000 false chr5: 39276407-39278406 Medicago truncatula
Medtr5g090170 2.0kb downstream 2.0kb downstream 6911 true chr5: 39278407-39285317 Medicago truncatula
Medtr5g090170 2.0kb downstream 2.0kb downstream 2000 false chr5: 39283318-39285317 Medicago truncatula
Medtr5g090170 5.0kb upstream 5.0kb upstream 9911 true chr5: 39273407-39283317 Medicago truncatula
Medtr5g090170 5.0kb upstream 5.0kb upstream 5000 false chr5: 39273407-39278406 Medicago truncatula
Medtr5g090170 5.0kb downstream 5.0kb downstream 9911 true chr5: 39278407-39288317 Medicago truncatula
Medtr5g090170 5.0kb downstream 5.0kb downstream 5000 false chr5: 39283318-39288317 Medicago truncatula
Medtr5g090170 10.0kb upstream 10.0kb upstream 14911 true chr5: 39268407-39283317 Medicago truncatula
Medtr5g090170 10.0kb upstream 10.0kb upstream 10000 false chr5: 39268407-39278406 Medicago truncatula
Medtr5g090170 10.0kb downstream 10.0kb downstream 14911 true chr5: 39278407-39293317 Medicago truncatula
Medtr5g090170 10.0kb downstream 10.0kb downstream 10000 false chr5: 39283318-39293317 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301275 5265 Fabidae View MSA
124060699 5270 Rosid View MSA
123741070 5271 Pentapetalae View MSA
122791611 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.274        
cufflinks 0.276        
cufflinks 0.348        
cufflinks 0.008     Low Low
cufflinks 0.366        
cufflinks 0.029     Low  
cufflinks 0.059     Low  
cufflinks 0.321        
cufflinks 0.043     Low  

0 Strain