Gene : Medtr5g089750 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Description:  lateral root primordium (LRP)-like protein
Genomic Order:  5101 Name:  ? Medtr5g089750
Secondary Identifier:  ? PAC:31090022
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g089750 0.5kb upstream 0.5kb upstream 3150 true chr5: 39017917-39021066 Medicago truncatula
Medtr5g089750 0.5kb upstream 0.5kb upstream 500 false chr5: 39020567-39021066 Medicago truncatula
Medtr5g089750 0.5kb downstream 0.5kb downstream 3150 true chr5: 39017417-39020566 Medicago truncatula
Medtr5g089750 0.5kb downstream 0.5kb downstream 500 false chr5: 39017417-39017916 Medicago truncatula
Medtr5g089750 1.0kb upstream 1.0kb upstream 3650 true chr5: 39017917-39021566 Medicago truncatula
Medtr5g089750 1.0kb upstream 1.0kb upstream 1000 false chr5: 39020567-39021566 Medicago truncatula
Medtr5g089750 1.0kb downstream 1.0kb downstream 3650 true chr5: 39016917-39020566 Medicago truncatula
Medtr5g089750 1.0kb downstream 1.0kb downstream 1000 false chr5: 39016917-39017916 Medicago truncatula
Medtr5g089750 2.0kb upstream 2.0kb upstream 4650 true chr5: 39017917-39022566 Medicago truncatula
Medtr5g089750 2.0kb upstream 2.0kb upstream 2000 false chr5: 39020567-39022566 Medicago truncatula
Medtr5g089750 2.0kb downstream 2.0kb downstream 4650 true chr5: 39015917-39020566 Medicago truncatula
Medtr5g089750 2.0kb downstream 2.0kb downstream 2000 false chr5: 39015917-39017916 Medicago truncatula
Medtr5g089750 5.0kb upstream 5.0kb upstream 7650 true chr5: 39017917-39025566 Medicago truncatula
Medtr5g089750 5.0kb upstream 5.0kb upstream 5000 false chr5: 39020567-39025566 Medicago truncatula
Medtr5g089750 5.0kb downstream 5.0kb downstream 7650 true chr5: 39012917-39020566 Medicago truncatula
Medtr5g089750 5.0kb downstream 5.0kb downstream 5000 false chr5: 39012917-39017916 Medicago truncatula
Medtr5g089750 10.0kb upstream 10.0kb upstream 12650 true chr5: 39017917-39030566 Medicago truncatula
Medtr5g089750 10.0kb upstream 10.0kb upstream 10000 false chr5: 39020567-39030566 Medicago truncatula
Medtr5g089750 10.0kb downstream 10.0kb downstream 12650 true chr5: 39007917-39020566 Medicago truncatula
Medtr5g089750 10.0kb downstream 10.0kb downstream 10000 false chr5: 39007917-39017916 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310499 5265 Fabidae View MSA
124069167 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.574        
cufflinks 2.762        
cufflinks 1.82       Low
cufflinks 2.969        
cufflinks 3.017        
cufflinks 3.294        
cufflinks 4.849        
cufflinks 1.858       Low
cufflinks 6.372       High

0 Strain