Gene : Medtr5g092700 M. truncatula Mt4.0v1
Defline:  (1 of 6) PF00240//PF11976 - Ubiquitin family (ubiquitin) // Ubiquitin-2 like Rad60 SUMO-like (Rad60-SLD) Description:  ubiquitin-NEDD8 RUB1-like protein
Genomic Order:  5329 Name:  ? Medtr5g092700
Secondary Identifier:  ? PAC:31090714
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g092700 0.5kb upstream 0.5kb upstream 1425 true chr5: 40492257-40493681 Medicago truncatula
Medtr5g092700 0.5kb upstream 0.5kb upstream 500 false chr5: 40493182-40493681 Medicago truncatula
Medtr5g092700 0.5kb downstream 0.5kb downstream 1425 true chr5: 40491757-40493181 Medicago truncatula
Medtr5g092700 0.5kb downstream 0.5kb downstream 500 false chr5: 40491757-40492256 Medicago truncatula
Medtr5g092700 1.0kb upstream 1.0kb upstream 1925 true chr5: 40492257-40494181 Medicago truncatula
Medtr5g092700 1.0kb upstream 1.0kb upstream 1000 false chr5: 40493182-40494181 Medicago truncatula
Medtr5g092700 1.0kb downstream 1.0kb downstream 1925 true chr5: 40491257-40493181 Medicago truncatula
Medtr5g092700 1.0kb downstream 1.0kb downstream 1000 false chr5: 40491257-40492256 Medicago truncatula
Medtr5g092700 2.0kb upstream 2.0kb upstream 2925 true chr5: 40492257-40495181 Medicago truncatula
Medtr5g092700 2.0kb upstream 2.0kb upstream 2000 false chr5: 40493182-40495181 Medicago truncatula
Medtr5g092700 2.0kb downstream 2.0kb downstream 2925 true chr5: 40490257-40493181 Medicago truncatula
Medtr5g092700 2.0kb downstream 2.0kb downstream 2000 false chr5: 40490257-40492256 Medicago truncatula
Medtr5g092700 5.0kb upstream 5.0kb upstream 5925 true chr5: 40492257-40498181 Medicago truncatula
Medtr5g092700 5.0kb upstream 5.0kb upstream 5000 false chr5: 40493182-40498181 Medicago truncatula
Medtr5g092700 5.0kb downstream 5.0kb downstream 5925 true chr5: 40487257-40493181 Medicago truncatula
Medtr5g092700 5.0kb downstream 5.0kb downstream 5000 false chr5: 40487257-40492256 Medicago truncatula
Medtr5g092700 10.0kb upstream 10.0kb upstream 10925 true chr5: 40492257-40503181 Medicago truncatula
Medtr5g092700 10.0kb upstream 10.0kb upstream 10000 false chr5: 40493182-40503181 Medicago truncatula
Medtr5g092700 10.0kb downstream 10.0kb downstream 10925 true chr5: 40482257-40493181 Medicago truncatula
Medtr5g092700 10.0kb downstream 10.0kb downstream 10000 false chr5: 40482257-40492256 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029747 5273 Angiosperm View MSA
122314148 5265 Fabidae View MSA
124062701 5270 Rosid View MSA
123752540 5271 Pentapetalae View MSA
122796500 5272 Eudicot View MSA
121351277 5274 Embryophyte View MSA
123428084 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.221     High  
cufflinks 21.837     High  
cufflinks 21.986     High  
cufflinks 17.786     High  
cufflinks 26.983     High  
cufflinks 12.536     High Low
cufflinks 30.889     High  
cufflinks 19.43     High  
cufflinks 41.55     High High

0 Strain