Gene : Medtr5g091930 M. truncatula Mt4.0v1
Defline:  (1 of 3) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Description:  citrate synthase 3, peroxisomal protein
Genomic Order:  5272 Name:  ? Medtr5g091930
Secondary Identifier:  ? PAC:31089453
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYOXYLATE-BYPASS Medicago truncatula pathologic  
Mtruncatula PWY-5464 Medicago truncatula pathologic  
Mtruncatula PWY-561 Medicago truncatula pathologic  
Mtruncatula PWY-5690 Medicago truncatula pathologic  
Mtruncatula PWY-6549 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g091930 0.5kb upstream 0.5kb upstream 5234 true chr5: 40118697-40123930 Medicago truncatula
Medtr5g091930 0.5kb upstream 0.5kb upstream 500 false chr5: 40118697-40119196 Medicago truncatula
Medtr5g091930 0.5kb downstream 0.5kb downstream 5234 true chr5: 40119197-40124430 Medicago truncatula
Medtr5g091930 0.5kb downstream 0.5kb downstream 500 false chr5: 40123931-40124430 Medicago truncatula
Medtr5g091930 1.0kb upstream 1.0kb upstream 5734 true chr5: 40118197-40123930 Medicago truncatula
Medtr5g091930 1.0kb upstream 1.0kb upstream 1000 false chr5: 40118197-40119196 Medicago truncatula
Medtr5g091930 1.0kb downstream 1.0kb downstream 5734 true chr5: 40119197-40124930 Medicago truncatula
Medtr5g091930 1.0kb downstream 1.0kb downstream 1000 false chr5: 40123931-40124930 Medicago truncatula
Medtr5g091930 2.0kb upstream 2.0kb upstream 6734 true chr5: 40117197-40123930 Medicago truncatula
Medtr5g091930 2.0kb upstream 2.0kb upstream 2000 false chr5: 40117197-40119196 Medicago truncatula
Medtr5g091930 2.0kb downstream 2.0kb downstream 6734 true chr5: 40119197-40125930 Medicago truncatula
Medtr5g091930 2.0kb downstream 2.0kb downstream 2000 false chr5: 40123931-40125930 Medicago truncatula
Medtr5g091930 5.0kb upstream 5.0kb upstream 9734 true chr5: 40114197-40123930 Medicago truncatula
Medtr5g091930 5.0kb upstream 5.0kb upstream 5000 false chr5: 40114197-40119196 Medicago truncatula
Medtr5g091930 5.0kb downstream 5.0kb downstream 9734 true chr5: 40119197-40128930 Medicago truncatula
Medtr5g091930 5.0kb downstream 5.0kb downstream 5000 false chr5: 40123931-40128930 Medicago truncatula
Medtr5g091930 10.0kb upstream 10.0kb upstream 14734 true chr5: 40109197-40123930 Medicago truncatula
Medtr5g091930 10.0kb upstream 10.0kb upstream 10000 false chr5: 40109197-40119196 Medicago truncatula
Medtr5g091930 10.0kb downstream 10.0kb downstream 14734 true chr5: 40119197-40133930 Medicago truncatula
Medtr5g091930 10.0kb downstream 10.0kb downstream 10000 false chr5: 40123931-40133930 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309645 5265 Fabidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.065        
cufflinks 0.236       Low
cufflinks 0.858        
cufflinks 1.411        
cufflinks 0.117       Low
cufflinks 2.093       High
cufflinks 1.715        
cufflinks 0.336        
cufflinks 0.743        

0 Strain