Gene : Medtr5g083790 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11545:SF3 - 60S RIBOSOMAL PROTEIN L13A Description:  60S ribosomal protein L13a-4
Genomic Order:  4680 Name:  ? Medtr5g083790
Secondary Identifier:  ? PAC:31085806
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g083790 0.5kb upstream 0.5kb upstream 2747 true chr5: 36148013-36150759 Medicago truncatula
Medtr5g083790 0.5kb upstream 0.5kb upstream 500 false chr5: 36150260-36150759 Medicago truncatula
Medtr5g083790 0.5kb downstream 0.5kb downstream 2747 true chr5: 36147513-36150259 Medicago truncatula
Medtr5g083790 0.5kb downstream 0.5kb downstream 500 false chr5: 36147513-36148012 Medicago truncatula
Medtr5g083790 1.0kb upstream 1.0kb upstream 3247 true chr5: 36148013-36151259 Medicago truncatula
Medtr5g083790 1.0kb upstream 1.0kb upstream 1000 false chr5: 36150260-36151259 Medicago truncatula
Medtr5g083790 1.0kb downstream 1.0kb downstream 3247 true chr5: 36147013-36150259 Medicago truncatula
Medtr5g083790 1.0kb downstream 1.0kb downstream 1000 false chr5: 36147013-36148012 Medicago truncatula
Medtr5g083790 2.0kb upstream 2.0kb upstream 4247 true chr5: 36148013-36152259 Medicago truncatula
Medtr5g083790 2.0kb upstream 2.0kb upstream 2000 false chr5: 36150260-36152259 Medicago truncatula
Medtr5g083790 2.0kb downstream 2.0kb downstream 4247 true chr5: 36146013-36150259 Medicago truncatula
Medtr5g083790 2.0kb downstream 2.0kb downstream 2000 false chr5: 36146013-36148012 Medicago truncatula
Medtr5g083790 5.0kb upstream 5.0kb upstream 7247 true chr5: 36148013-36155259 Medicago truncatula
Medtr5g083790 5.0kb upstream 5.0kb upstream 5000 false chr5: 36150260-36155259 Medicago truncatula
Medtr5g083790 5.0kb downstream 5.0kb downstream 7247 true chr5: 36143013-36150259 Medicago truncatula
Medtr5g083790 5.0kb downstream 5.0kb downstream 5000 false chr5: 36143013-36148012 Medicago truncatula
Medtr5g083790 10.0kb upstream 10.0kb upstream 12247 true chr5: 36148013-36160259 Medicago truncatula
Medtr5g083790 10.0kb upstream 10.0kb upstream 10000 false chr5: 36150260-36160259 Medicago truncatula
Medtr5g083790 10.0kb downstream 10.0kb downstream 12247 true chr5: 36138013-36150259 Medicago truncatula
Medtr5g083790 10.0kb downstream 10.0kb downstream 10000 false chr5: 36138013-36148012 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310047 5265 Fabidae View MSA
124069577 5270 Rosid View MSA
123745483 5271 Pentapetalae View MSA
122796740 5272 Eudicot View MSA
122042126 5273 Angiosperm View MSA
121343862 5274 Embryophyte View MSA
123428218 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.391       Low
cufflinks 8.334        
cufflinks 6.087        
cufflinks 6.244        
cufflinks 16.855     High High
cufflinks 1.851       Low
cufflinks 10.241     High  
cufflinks 7.397        
cufflinks 11.263     High  

0 Strain