Gene : Medtr5g082150 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF07014 - Hs1pro-1 protein C-terminus (Hs1pro-1_C) Description:  nematode resistance HSPRO2-like protein
Genomic Order:  4559 Name:  ? Medtr5g082150
Secondary Identifier:  ? PAC:31089009
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g082150 0.5kb upstream 0.5kb upstream 2299 true chr5: 35282370-35284668 Medicago truncatula
Medtr5g082150 0.5kb upstream 0.5kb upstream 500 false chr5: 35284169-35284668 Medicago truncatula
Medtr5g082150 0.5kb downstream 0.5kb downstream 2299 true chr5: 35281870-35284168 Medicago truncatula
Medtr5g082150 0.5kb downstream 0.5kb downstream 500 false chr5: 35281870-35282369 Medicago truncatula
Medtr5g082150 1.0kb upstream 1.0kb upstream 2799 true chr5: 35282370-35285168 Medicago truncatula
Medtr5g082150 1.0kb upstream 1.0kb upstream 1000 false chr5: 35284169-35285168 Medicago truncatula
Medtr5g082150 1.0kb downstream 1.0kb downstream 2799 true chr5: 35281370-35284168 Medicago truncatula
Medtr5g082150 1.0kb downstream 1.0kb downstream 1000 false chr5: 35281370-35282369 Medicago truncatula
Medtr5g082150 2.0kb upstream 2.0kb upstream 3799 true chr5: 35282370-35286168 Medicago truncatula
Medtr5g082150 2.0kb upstream 2.0kb upstream 2000 false chr5: 35284169-35286168 Medicago truncatula
Medtr5g082150 2.0kb downstream 2.0kb downstream 3799 true chr5: 35280370-35284168 Medicago truncatula
Medtr5g082150 2.0kb downstream 2.0kb downstream 2000 false chr5: 35280370-35282369 Medicago truncatula
Medtr5g082150 5.0kb upstream 5.0kb upstream 6799 true chr5: 35282370-35289168 Medicago truncatula
Medtr5g082150 5.0kb upstream 5.0kb upstream 5000 false chr5: 35284169-35289168 Medicago truncatula
Medtr5g082150 5.0kb downstream 5.0kb downstream 6799 true chr5: 35277370-35284168 Medicago truncatula
Medtr5g082150 5.0kb downstream 5.0kb downstream 5000 false chr5: 35277370-35282369 Medicago truncatula
Medtr5g082150 10.0kb upstream 10.0kb upstream 11799 true chr5: 35282370-35294168 Medicago truncatula
Medtr5g082150 10.0kb upstream 10.0kb upstream 10000 false chr5: 35284169-35294168 Medicago truncatula
Medtr5g082150 10.0kb downstream 10.0kb downstream 11799 true chr5: 35272370-35284168 Medicago truncatula
Medtr5g082150 10.0kb downstream 10.0kb downstream 10000 false chr5: 35272370-35282369 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121658335 5273 Angiosperm View MSA
122296548 5265 Fabidae View MSA
124041943 5270 Rosid View MSA
123612505 5271 Pentapetalae View MSA
122647004 5272 Eudicot View MSA
120930325 5274 Embryophyte View MSA
122970837 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 138.418     High High
cufflinks 12.713     High Low
cufflinks 35.942     High  
cufflinks 41.266     High  
cufflinks 21.723     High  
cufflinks 39.98     High  
cufflinks 149.81     High High
cufflinks 27.105     High  
cufflinks 133.244     High High

0 Strain