Gene : Medtr5g085010 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR23163:SF0 - E3 UBIQUITIN-PROTEIN LIGASE BRE1 Description:  E3 ubiquitin-protein ligase BRE1-like protein
Genomic Order:  4770 Name:  ? Medtr5g085010
Secondary Identifier:  ? PAC:31086812
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g085010 0.5kb upstream 0.5kb upstream 23672 true chr5: 36657703-36681374 Medicago truncatula
Medtr5g085010 0.5kb upstream 0.5kb upstream 500 false chr5: 36680875-36681374 Medicago truncatula
Medtr5g085010 0.5kb downstream 0.5kb downstream 23672 true chr5: 36657203-36680874 Medicago truncatula
Medtr5g085010 0.5kb downstream 0.5kb downstream 500 false chr5: 36657203-36657702 Medicago truncatula
Medtr5g085010 1.0kb upstream 1.0kb upstream 24172 true chr5: 36657703-36681874 Medicago truncatula
Medtr5g085010 1.0kb upstream 1.0kb upstream 1000 false chr5: 36680875-36681874 Medicago truncatula
Medtr5g085010 1.0kb downstream 1.0kb downstream 24172 true chr5: 36656703-36680874 Medicago truncatula
Medtr5g085010 1.0kb downstream 1.0kb downstream 1000 false chr5: 36656703-36657702 Medicago truncatula
Medtr5g085010 2.0kb upstream 2.0kb upstream 25172 true chr5: 36657703-36682874 Medicago truncatula
Medtr5g085010 2.0kb upstream 2.0kb upstream 2000 false chr5: 36680875-36682874 Medicago truncatula
Medtr5g085010 2.0kb downstream 2.0kb downstream 25172 true chr5: 36655703-36680874 Medicago truncatula
Medtr5g085010 2.0kb downstream 2.0kb downstream 2000 false chr5: 36655703-36657702 Medicago truncatula
Medtr5g085010 5.0kb upstream 5.0kb upstream 28172 true chr5: 36657703-36685874 Medicago truncatula
Medtr5g085010 5.0kb upstream 5.0kb upstream 5000 false chr5: 36680875-36685874 Medicago truncatula
Medtr5g085010 5.0kb downstream 5.0kb downstream 28172 true chr5: 36652703-36680874 Medicago truncatula
Medtr5g085010 5.0kb downstream 5.0kb downstream 5000 false chr5: 36652703-36657702 Medicago truncatula
Medtr5g085010 10.0kb upstream 10.0kb upstream 33172 true chr5: 36657703-36690874 Medicago truncatula
Medtr5g085010 10.0kb upstream 10.0kb upstream 10000 false chr5: 36680875-36690874 Medicago truncatula
Medtr5g085010 10.0kb downstream 10.0kb downstream 33172 true chr5: 36647703-36680874 Medicago truncatula
Medtr5g085010 10.0kb downstream 10.0kb downstream 10000 false chr5: 36647703-36657702 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307640 5265 Fabidae View MSA
124068574 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.753       High
cufflinks 1.413        
cufflinks 2.194        
cufflinks 0.267       Low
cufflinks 1.95        
cufflinks 0.562        
cufflinks 0.664        
cufflinks 1.422        
cufflinks 0.51        

0 Strain