Gene : Medtr5g085380 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11124 - VACUOLAR SORTING PROTEIN VPS29 Description:  vacuolar protein sorting-associated protein
Genomic Order:  4798 Name:  ? Medtr5g085380
Secondary Identifier:  ? PAC:31090377
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g085380 0.5kb upstream 0.5kb upstream 5530 true chr5: 36907586-36913115 Medicago truncatula
Medtr5g085380 0.5kb upstream 0.5kb upstream 500 false chr5: 36907586-36908085 Medicago truncatula
Medtr5g085380 0.5kb downstream 0.5kb downstream 5530 true chr5: 36908086-36913615 Medicago truncatula
Medtr5g085380 0.5kb downstream 0.5kb downstream 500 false chr5: 36913116-36913615 Medicago truncatula
Medtr5g085380 1.0kb upstream 1.0kb upstream 6030 true chr5: 36907086-36913115 Medicago truncatula
Medtr5g085380 1.0kb upstream 1.0kb upstream 1000 false chr5: 36907086-36908085 Medicago truncatula
Medtr5g085380 1.0kb downstream 1.0kb downstream 6030 true chr5: 36908086-36914115 Medicago truncatula
Medtr5g085380 1.0kb downstream 1.0kb downstream 1000 false chr5: 36913116-36914115 Medicago truncatula
Medtr5g085380 2.0kb upstream 2.0kb upstream 7030 true chr5: 36906086-36913115 Medicago truncatula
Medtr5g085380 2.0kb upstream 2.0kb upstream 2000 false chr5: 36906086-36908085 Medicago truncatula
Medtr5g085380 2.0kb downstream 2.0kb downstream 7030 true chr5: 36908086-36915115 Medicago truncatula
Medtr5g085380 2.0kb downstream 2.0kb downstream 2000 false chr5: 36913116-36915115 Medicago truncatula
Medtr5g085380 5.0kb upstream 5.0kb upstream 10030 true chr5: 36903086-36913115 Medicago truncatula
Medtr5g085380 5.0kb upstream 5.0kb upstream 5000 false chr5: 36903086-36908085 Medicago truncatula
Medtr5g085380 5.0kb downstream 5.0kb downstream 10030 true chr5: 36908086-36918115 Medicago truncatula
Medtr5g085380 5.0kb downstream 5.0kb downstream 5000 false chr5: 36913116-36918115 Medicago truncatula
Medtr5g085380 10.0kb upstream 10.0kb upstream 15030 true chr5: 36898086-36913115 Medicago truncatula
Medtr5g085380 10.0kb upstream 10.0kb upstream 10000 false chr5: 36898086-36908085 Medicago truncatula
Medtr5g085380 10.0kb downstream 10.0kb downstream 15030 true chr5: 36908086-36923115 Medicago truncatula
Medtr5g085380 10.0kb downstream 10.0kb downstream 10000 false chr5: 36913116-36923115 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122295691 5265 Fabidae View MSA
124071774 5270 Rosid View MSA
123736460 5271 Pentapetalae View MSA
122787236 5272 Eudicot View MSA
122043646 5273 Angiosperm View MSA
121346806 5274 Embryophyte View MSA
123424212 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.721       Low
cufflinks 1.873        
cufflinks 1.421        
cufflinks 3.952       High
cufflinks 2.123        
cufflinks 2.9        
cufflinks 1.417        
cufflinks 1.466        
cufflinks 2.946        

0 Strain