Gene : Medtr5g085300 M. truncatula Mt4.0v1
Defline:  (1 of 3) KOG1572 - Predicted protein tyrosine phosphatase Description:  tyrosine specific protein phosphatase family protein
Genomic Order:  4789 Name:  ? Medtr5g085300
Secondary Identifier:  ? PAC:31091267
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g085300 0.5kb upstream 0.5kb upstream 5846 true chr5: 36837011-36842856 Medicago truncatula
Medtr5g085300 0.5kb upstream 0.5kb upstream 500 false chr5: 36837011-36837510 Medicago truncatula
Medtr5g085300 0.5kb downstream 0.5kb downstream 5846 true chr5: 36837511-36843356 Medicago truncatula
Medtr5g085300 0.5kb downstream 0.5kb downstream 500 false chr5: 36842857-36843356 Medicago truncatula
Medtr5g085300 1.0kb upstream 1.0kb upstream 6346 true chr5: 36836511-36842856 Medicago truncatula
Medtr5g085300 1.0kb upstream 1.0kb upstream 1000 false chr5: 36836511-36837510 Medicago truncatula
Medtr5g085300 1.0kb downstream 1.0kb downstream 6346 true chr5: 36837511-36843856 Medicago truncatula
Medtr5g085300 1.0kb downstream 1.0kb downstream 1000 false chr5: 36842857-36843856 Medicago truncatula
Medtr5g085300 2.0kb upstream 2.0kb upstream 7346 true chr5: 36835511-36842856 Medicago truncatula
Medtr5g085300 2.0kb upstream 2.0kb upstream 2000 false chr5: 36835511-36837510 Medicago truncatula
Medtr5g085300 2.0kb downstream 2.0kb downstream 7346 true chr5: 36837511-36844856 Medicago truncatula
Medtr5g085300 2.0kb downstream 2.0kb downstream 2000 false chr5: 36842857-36844856 Medicago truncatula
Medtr5g085300 5.0kb upstream 5.0kb upstream 10346 true chr5: 36832511-36842856 Medicago truncatula
Medtr5g085300 5.0kb upstream 5.0kb upstream 5000 false chr5: 36832511-36837510 Medicago truncatula
Medtr5g085300 5.0kb downstream 5.0kb downstream 10346 true chr5: 36837511-36847856 Medicago truncatula
Medtr5g085300 5.0kb downstream 5.0kb downstream 5000 false chr5: 36842857-36847856 Medicago truncatula
Medtr5g085300 10.0kb upstream 10.0kb upstream 15346 true chr5: 36827511-36842856 Medicago truncatula
Medtr5g085300 10.0kb upstream 10.0kb upstream 10000 false chr5: 36827511-36837510 Medicago truncatula
Medtr5g085300 10.0kb downstream 10.0kb downstream 15346 true chr5: 36837511-36852856 Medicago truncatula
Medtr5g085300 10.0kb downstream 10.0kb downstream 10000 false chr5: 36842857-36852856 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308728 5265 Fabidae View MSA
124073099 5270 Rosid View MSA
123742973 5271 Pentapetalae View MSA
122795531 5272 Eudicot View MSA
122050938 5273 Angiosperm View MSA
121344841 5274 Embryophyte View MSA
123380112 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.538       High
cufflinks 0.754        
cufflinks 1.175        
cufflinks 1.288        
cufflinks 0.686       Low
cufflinks 0.791        
cufflinks 1.643        
cufflinks 1.03        
cufflinks 1.376        

0 Strain