Gene : Medtr5g085250 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22847:SF451 - E3 UBIQUITIN-PROTEIN LIGASE RFWD2 Description:  E3 ubiquitin-protein ligase COP1
Genomic Order:  4784 Name:  ? Medtr5g085250
Secondary Identifier:  ? PAC:31088656
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g085250 0.5kb upstream 0.5kb upstream 11739 true chr5: 36795522-36807260 Medicago truncatula
Medtr5g085250 0.5kb upstream 0.5kb upstream 500 false chr5: 36795522-36796021 Medicago truncatula
Medtr5g085250 0.5kb downstream 0.5kb downstream 11739 true chr5: 36796022-36807760 Medicago truncatula
Medtr5g085250 0.5kb downstream 0.5kb downstream 500 false chr5: 36807261-36807760 Medicago truncatula
Medtr5g085250 1.0kb upstream 1.0kb upstream 12239 true chr5: 36795022-36807260 Medicago truncatula
Medtr5g085250 1.0kb upstream 1.0kb upstream 1000 false chr5: 36795022-36796021 Medicago truncatula
Medtr5g085250 1.0kb downstream 1.0kb downstream 12239 true chr5: 36796022-36808260 Medicago truncatula
Medtr5g085250 1.0kb downstream 1.0kb downstream 1000 false chr5: 36807261-36808260 Medicago truncatula
Medtr5g085250 2.0kb upstream 2.0kb upstream 13239 true chr5: 36794022-36807260 Medicago truncatula
Medtr5g085250 2.0kb upstream 2.0kb upstream 2000 false chr5: 36794022-36796021 Medicago truncatula
Medtr5g085250 2.0kb downstream 2.0kb downstream 13239 true chr5: 36796022-36809260 Medicago truncatula
Medtr5g085250 2.0kb downstream 2.0kb downstream 2000 false chr5: 36807261-36809260 Medicago truncatula
Medtr5g085250 5.0kb upstream 5.0kb upstream 16239 true chr5: 36791022-36807260 Medicago truncatula
Medtr5g085250 5.0kb upstream 5.0kb upstream 5000 false chr5: 36791022-36796021 Medicago truncatula
Medtr5g085250 5.0kb downstream 5.0kb downstream 16239 true chr5: 36796022-36812260 Medicago truncatula
Medtr5g085250 5.0kb downstream 5.0kb downstream 5000 false chr5: 36807261-36812260 Medicago truncatula
Medtr5g085250 10.0kb upstream 10.0kb upstream 21239 true chr5: 36786022-36807260 Medicago truncatula
Medtr5g085250 10.0kb upstream 10.0kb upstream 10000 false chr5: 36786022-36796021 Medicago truncatula
Medtr5g085250 10.0kb downstream 10.0kb downstream 21239 true chr5: 36796022-36817260 Medicago truncatula
Medtr5g085250 10.0kb downstream 10.0kb downstream 10000 false chr5: 36807261-36817260 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300260 5265 Fabidae View MSA
124074253 5270 Rosid View MSA
123741862 5271 Pentapetalae View MSA
122790393 5272 Eudicot View MSA
122044386 5273 Angiosperm View MSA
121345400 5274 Embryophyte View MSA
123427986 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.44        
cufflinks 1.821       High
cufflinks 1.013        
cufflinks 0.346       Low
cufflinks 1.751       High
cufflinks 0.273       Low
cufflinks 0.688        
cufflinks 1.244        
cufflinks 0.494        

0 Strain