Gene : Medtr5g088720 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22763//PTHR22763:SF24 - RING ZINC FINGER PROTEIN Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  5026 Name:  ? Medtr5g088720
Secondary Identifier:  ? PAC:31086216
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g088720 0.5kb upstream 0.5kb upstream 7104 true chr5: 38506948-38514051 Medicago truncatula
Medtr5g088720 0.5kb upstream 0.5kb upstream 500 false chr5: 38506948-38507447 Medicago truncatula
Medtr5g088720 0.5kb downstream 0.5kb downstream 7104 true chr5: 38507448-38514551 Medicago truncatula
Medtr5g088720 0.5kb downstream 0.5kb downstream 500 false chr5: 38514052-38514551 Medicago truncatula
Medtr5g088720 1.0kb upstream 1.0kb upstream 7604 true chr5: 38506448-38514051 Medicago truncatula
Medtr5g088720 1.0kb upstream 1.0kb upstream 1000 false chr5: 38506448-38507447 Medicago truncatula
Medtr5g088720 1.0kb downstream 1.0kb downstream 7604 true chr5: 38507448-38515051 Medicago truncatula
Medtr5g088720 1.0kb downstream 1.0kb downstream 1000 false chr5: 38514052-38515051 Medicago truncatula
Medtr5g088720 2.0kb upstream 2.0kb upstream 8604 true chr5: 38505448-38514051 Medicago truncatula
Medtr5g088720 2.0kb upstream 2.0kb upstream 2000 false chr5: 38505448-38507447 Medicago truncatula
Medtr5g088720 2.0kb downstream 2.0kb downstream 8604 true chr5: 38507448-38516051 Medicago truncatula
Medtr5g088720 2.0kb downstream 2.0kb downstream 2000 false chr5: 38514052-38516051 Medicago truncatula
Medtr5g088720 5.0kb upstream 5.0kb upstream 11604 true chr5: 38502448-38514051 Medicago truncatula
Medtr5g088720 5.0kb upstream 5.0kb upstream 5000 false chr5: 38502448-38507447 Medicago truncatula
Medtr5g088720 5.0kb downstream 5.0kb downstream 11604 true chr5: 38507448-38519051 Medicago truncatula
Medtr5g088720 5.0kb downstream 5.0kb downstream 5000 false chr5: 38514052-38519051 Medicago truncatula
Medtr5g088720 10.0kb upstream 10.0kb upstream 16604 true chr5: 38497448-38514051 Medicago truncatula
Medtr5g088720 10.0kb upstream 10.0kb upstream 10000 false chr5: 38497448-38507447 Medicago truncatula
Medtr5g088720 10.0kb downstream 10.0kb downstream 16604 true chr5: 38507448-38524051 Medicago truncatula
Medtr5g088720 10.0kb downstream 10.0kb downstream 10000 false chr5: 38514052-38524051 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311053 5265 Fabidae View MSA
124070952 5270 Rosid View MSA
123745999 5271 Pentapetalae View MSA
122790564 5272 Eudicot View MSA
122048435 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.988       High
cufflinks 2.129        
cufflinks 2.33        
cufflinks 3.064       High
cufflinks 2.231        
cufflinks 1.299       Low
cufflinks 2.238        
cufflinks 2.067        
cufflinks 2.92        

0 Strain